Hg_chrom9_TN10mRNA_17071
Organism: Heterodera glycines Gene Locus: chr9:2912989-2914547 Feature type: polypeptideProtein Sequence
Length: 276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 1.18 | 0.988 | 1.249 | 1.027 | 0.557 | 1.035 | 0.906 | 1.127 | 1.224 | 1.263 | 2.771 | 1.006 | 1.115 | 0.739 | 0.621 | 0.95 | 1.043 | 1.115 | 1.066 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16126
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKWK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.538
|
0.476
|
0.019
|
0.666
|
0.148
|
0.094
|
0.113
|
0.075
|
0.203
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012650
|
1.000
|
1.000
|
Hsc_gene_13091.t1
|
Hsc_gene_13091.t1
|
— | — |
AAK26377.1 putative alpha/beta hydrolase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.866|GO:0110165_0.866|GO:0005622_0.785|GO:0016020_0.781|GO:0005737_0.762|GO:0043226_0.743|GO:0043229_0.716|GO:0043227_0.715|GO:0043231_0.707|GO:0008150_0.595|GO:0005739_0.573|GO:0003674_0.542|GO:0009987_0.525
|
IPR000073+57-179+|IPR029058+32-243_34-264+
|
— |
PF00561+57-179+alpha/beta_hydrolase_fold
|
— |
PTHR46331+15-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
30892.890
|
7.505
|
3.500
|
25.362
|
10.507
|
42.754
|
57.246
|
13.768
|
11.594
|
50.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
cyan
|
631.967
|
454.237
|
467.294
|
524.720
|
846.500
|
2432.210
|
711.212
|
820.055
|
4.112
|
415.686
|
239.297
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.189
|
— |
0.276
|
0.658
|
1.538
|
-1.763
|
-1.678
|
— | — |
7.151
|
— | — | — |
No JSON data available for plots.