Hg_chrom9_TN10mRNA_17073
Organism: Heterodera glycines Gene Locus: chr9:2917371-2918617 Feature type: polypeptideProtein Sequence
Length: 175
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.399 | 1.196 | 1.247 | 0.0 | 2.952 | 0.879 | 0.952 | 0.857 | 1.143 | 1.004 | 0.779 | 3.361 | 1.746 | 0.33 | 1.283 | 0.98 | 0.468 | 0.952 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16128
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.479
|
0.268
|
0.102
|
0.654
|
0.220
|
0.277
|
0.199
|
0.043
|
0.415
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012651
|
1.000
|
1.000
|
Hsc_gene_13094.t1
|
Hsc_gene_13094.t1
|
— |
P04464.3 Calmodulin [Triticum aestivum]
|
KAH7716680.1 calmodulin [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.825|GO:0110165_0.791|GO:0005622_0.757|GO:0005737_0.726|GO:0003674_0.712|GO:0008150_0.701|GO:0005488_0.699|GO:0016020_0.626|GO:0009987_0.623|GO:0043226_0.615|GO:0005515_0.608|GO:0043229_0.573|GO:0043227_0.524|GO:0065007_0.519|GO:0050789_0.514
|
IPR002048+33-68_37-65_37-99_38-99_69-104_73-101_106-141_108-172_110-138_111-172_142-175_146-174+|IPR011992+22-173+|IPR018247+46-58_82-94_119-131_155-167+|IPR050145+30-171+
|
SM00054+37-65_73-101_110-138_146-174+
|
PF13499+38-99_108-172+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000178+27-174+Calmodulin-2_A
|
PTHR23050+30-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-102
|
1.000
|
103-175
|
7wzs_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
20058.280
|
4.115
|
-21.500
|
37.714
|
8.000
|
56.000
|
44.000
|
13.143
|
24.571
|
41.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkgreen
|
3017.245
|
345.968
|
1138.143
|
866.463
|
642.708
|
970.104
|
2084.700
|
2448.832
|
12034.779
|
988.019
|
5722.344
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.490
|
1.187
|
-0.286
|
-0.463
|
0.608
|
1.115
|
1.230
|
— |
3.482
|
-3.646
|
— | — | — |
No JSON data available for plots.