Hg_chrom9_TN10mRNA_17074
Organism: Heterodera glycines Gene Locus: chr9:2921844-2923729 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 0.722 | 1.92 | 0.0 | 2.588 | 1.274 | 0.961 | 0.0 | 1.38 | 1.007 | 0.659 | 2.923 | 2.07 | 0.0 | 1.141 | 0.621 | 0.815 | 0.659 | 0.0 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16129
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.839
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.452
|
0.197
|
0.056
|
0.688
|
0.305
|
0.314
|
0.254
|
0.165
|
0.359
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012652
|
1.000
|
1.000
|
Hsc_gene_13095.t1
|
Hsc_gene_13095.t1
|
— |
Q09665.1 Troponin C, isoform 2 [Caenorhabditis elegans]
|
KAI3413465.1 Troponin C, isoform 2 [Globodera pallida]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.750|GO:0110165_0.750|GO:0005622_0.700|GO:0005737_0.693|GO:0008150_0.645|GO:0003674_0.614|GO:0005488_0.571|GO:0043226_0.532|GO:0016020_0.530|GO:0043229_0.507|GO:0009987_0.504
|
IPR002048+16-51_19-81_20-48_52-87_56-84_93-128_95-159_97-125_97-159_129-161_133-161+|IPR011992+8-159+|IPR018247+65-77_142-154+|IPR050230+11-158+
|
SM00054+20-48_56-84_97-125_133-161+
|
PF13499+19-81_95-159+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000103+89-161+Troponin_C_Ib|G3DSA:1.10.238.10:FF:000336+12-88+HLH_domain-containing_protein
|
PTHR23048+11-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;137-161
|
1.000
|
6-136
|
8pb1_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
18460.350
|
3.822
|
-26.000
|
36.025
|
9.317
|
53.416
|
46.584
|
9.938
|
26.087
|
41.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
380.891
|
562.982
|
423.659
|
524.020
|
174.663
|
71.464
|
64.305
|
450.474
|
230.502
|
641.683
|
465.462
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.640
|
-0.241
|
0.415
|
-1.617
|
-1.275
|
— |
2.548
|
-2.664
|
— | — | — | — | — |
No JSON data available for plots.