Hg_chrom9_TN10mRNA_17075
Organism: Heterodera glycines Gene Locus: chr9:2924221-2924825 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 0.369 | 1.443 | 1.368 | 1.852 | 0.814 | 0.661 | 0.794 | 1.235 | 1.394 | 1.804 | 0.934 | 0.441 | 0.153 | 0.972 | 0.794 | 0.39 | 1.563 | 0.0 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16130
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.580
|
0.334
|
0.142
|
0.677
|
0.203
|
0.089
|
0.121
|
0.007
|
0.047
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012653
|
1.000
|
1.000
|
Hsc_gene_13096.t1
|
Hsc_gene_13096.t1
|
— |
P25398.3 Small ribosomal subunit protein eS12 [Homo sapiens]
|
KAI3413466.1 40S ribosomal protein S12 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.927|GO:0110165_0.924|GO:0005622_0.874|GO:0005737_0.830|GO:0043226_0.748|GO:0043229_0.740|GO:0005829_0.598|GO:0003674_0.517|GO:0008150_0.513|GO:0016020_0.508
|
IPR000530+14-27_28-44_69-90_94-107+|IPR004038+11-102+|IPR029064+2-124_8-123+
|
— |
PF01248+11-102+Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family
|
— |
PTHR11843+4-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-126
|
7tql_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
13993.170
|
5.336
|
-2.000
|
37.302
|
4.762
|
50.000
|
50.000
|
18.254
|
19.048
|
46.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
8872.378
|
2712.333
|
3701.999
|
8180.483
|
8183.573
|
6039.409
|
4830.574
|
2491.425
|
17037.720
|
12485.942
|
14436.704
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.220
|
1.456
|
1.252
|
— |
-0.423
|
-0.311
|
-1.387
|
1.100
|
— | — | — | — | — |
No JSON data available for plots.