Hg_chrom9_TN10mRNA_17076
Organism: Heterodera glycines Gene Locus: chr9:2925681-2927058 Feature type: polypeptideProtein Sequence
Length: 249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 0.747 | 1.022 | 0.554 | 1.406 | 1.442 | 0.861 | 0.803 | 1.339 | 1.357 | 1.217 | 2.126 | 0.558 | 0.618 | 0.984 | 0.574 | 1.053 | 0.669 | 0.927 | 1.181 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.707
|
0.276
|
0.012
|
0.632
|
0.107
|
0.072
|
0.118
|
0.008
|
0.075
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012654
|
1.000
|
1.000
|
Hsc_gene_13097.t1
|
Hsc_gene_13097.t1
|
— |
Q9N599.2 Proteasome subunit alpha type-4 [Caenorhabditis elegans]
|
KAI3413467.1 Proteasome subunit alpha type-4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.894|GO:0110165_0.885|GO:0005622_0.850|GO:0005737_0.713|GO:0043226_0.697|GO:0043229_0.665|GO:0016020_0.660|GO:0032991_0.581|GO:0043227_0.567|GO:0043231_0.561|GO:0008150_0.517
|
IPR000426+5-27+|IPR001353+30-212+|IPR023332+20-237+|IPR029055+1-249_4-241+|IPR050115+3-223+
|
SM00948+5-27+
|
PF00227+30-212+Proteasome_subunit|PF10584+5-27+Proteasome_subunit_A_N-terminal_signature
|
G3DSA:3.60.20.10:FF:000031+1-249+Proteasome_subunit_alpha_type
|
PTHR11599+3-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
208-249
|
1.000
|
1-207
|
8yvg_Z
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
28026.110
|
6.139
|
-1.000
|
28.514
|
8.835
|
47.791
|
52.209
|
14.458
|
14.056
|
44.578
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4583.249
|
3727.528
|
3196.390
|
3459.978
|
3664.530
|
3145.345
|
3302.541
|
3432.892
|
8212.441
|
4918.933
|
6330.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.451
|
-0.245
|
0.223
|
— |
-0.205
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.