Hg_chrom9_TN10mRNA_17077
Organism: Heterodera glycines Gene Locus: chr9:2927314-2928935 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.077 | 0.718 | 0.983 | 1.198 | 1.609 | 1.287 | 0.873 | 0.193 | 0.686 | 0.939 | 1.404 | 1.817 | 1.287 | 0.594 | 1.34 | 0.883 | 0.506 | 0.468 | 1.485 | 1.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16132
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.642
|
0.345
|
0.036
|
0.399
|
0.064
|
0.067
|
0.052
|
0.015
|
0.106
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012655
|
1.000
|
1.000
|
Hsc_gene_13098.t1
|
Hsc_gene_13098.t1
|
— |
Q23450.1 Cytochrome c oxidase assembly factor 7 homolog [Caenorhabditis elegans]
|
RCN46417.1 Sel1 repeat protein [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.899|GO:0110165_0.895|GO:0005622_0.834|GO:0016020_0.797|GO:0043226_0.785|GO:0043229_0.773|GO:0005737_0.767|GO:0043227_0.745|GO:0043231_0.724|GO:0005634_0.642|GO:0031974_0.600|GO:0043233_0.600|GO:0070013_0.600|GO:0031981_0.586|GO:0005739_0.568|GO:0005654_0.566|GO:0031967_0.560|GO:0005740_0.551|GO:0031970_0.545|GO:0005758_0.540
|
IPR006597+52-84_86-120_86-121_122-158_124-158_187-210_212-247_214-247+|IPR011990+46-256+|IPR040239+29-252+
|
SM00671+52-84_86-121_122-158_212-247+
|
PF08238+86-120_124-158_187-210_214-247+Sel1_repeat
|
— |
PTHR13891+29-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
29767.730
|
7.744
|
2.500
|
31.274
|
12.355
|
48.649
|
51.351
|
16.216
|
15.058
|
44.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
728.820
|
1229.542
|
748.019
|
598.056
|
705.612
|
609.124
|
519.396
|
754.074
|
369.274
|
975.200
|
715.517
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.947
|
-1.177
|
-0.214
|
0.207
|
— | — | — |
-0.393
|
— | — | — | — | — |
No JSON data available for plots.