Hg_chrom9_TN10mRNA_17079
Organism: Heterodera glycines Gene Locus: chr9:2931121-2932038 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 1.182 | 1.335 | 0.39 | 1.224 | 0.869 | 1.009 | 1.412 | 1.255 | 0.84 | 1.113 | 1.662 | 2.197 | 1.086 | 0.922 | 0.646 | 0.834 | 0.77 | 0.869 | 0.997 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.530
|
0.374
|
0.093
|
0.692
|
0.165
|
0.327
|
0.055
|
0.178
|
0.190
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012656
|
1.000
|
1.000
|
Hsc_gene_13100.t1
|
Hsc_gene_13100.t1
|
— |
Q42891.1 Lactoylglutathione lyase [Solanum lycopersicum]
|
KAI3413469.1 Lactoylglutathione lyase [Globodera pallida]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004462|GO:0046872
|
GO:0008150_0.843|GO:0003674_0.712|GO:0009987_0.603|GO:0003824_0.557|GO:0008152_0.511
|
IPR004360+31-171+|IPR004361+30-175+|IPR018146+32-53_115-131+|IPR029068+2-177_29-174+|IPR037523+29-174+
|
— |
PF00903+31-171+Glyoxalase/Bleomycin_resistance_protein/Dioxygenase_superfamily
|
— |
PTHR10374+5-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-177
|
6l0u_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
20205.820
|
5.633
|
-2.500
|
29.379
|
15.254
|
47.458
|
52.542
|
14.689
|
14.689
|
47.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
2090.696
|
920.782
|
1371.440
|
1617.564
|
2412.997
|
1744.705
|
2832.178
|
1588.730
|
2208.831
|
2807.025
|
2550.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.344
|
0.676
|
0.347
|
0.545
|
-0.453
|
0.710
|
-0.240
|
0.978
|
— | — | — | — | — |
No JSON data available for plots.