Hg_chrom9_TN10mRNA_17081
Organism: Heterodera glycines Gene Locus: chr9:2933717-2934683 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.664 | 0.26 | 0.246 | 0.238 | 0.916 | 1.531 | 1.071 | 2.381 | 2.413 | 0.433 | 0.84 | 3.373 | 0.549 | 0.729 | 0.306 | 0.703 | 1.407 | 1.648 | 0.21 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16136
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — |
53-73
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.070
|
0.191
|
0.087
|
0.114
|
0.809
|
0.846
|
0.683
|
0.081
|
0.344
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012658
|
1.000
|
1.000
|
Hsc_gene_13102.t1
|
Hsc_gene_13102.t1
|
— |
Q20263.2 Probable Golgi transport protein 1 [Caenorhabditis elegans]
|
KAI1728579.1 got1/Sft2-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888|GO:0016192|GO:0042147
|
GO:0005575_0.927|GO:0110165_0.919|GO:0071944_0.917|GO:0005886_0.912|GO:0016020_0.912|GO:0005622_0.815|GO:0005737_0.815|GO:0005773_0.800|GO:0043226_0.800|GO:0043227_0.800|GO:0043229_0.800|GO:0043231_0.800|GO:0012505_0.746|GO:0005783_0.703|GO:0008150_0.636|GO:0009987_0.591
|
IPR007305+17-114+|IPR045176+3-127+
|
— |
PF04178+17-114+Got1/Sft2-like_family
|
— |
PTHR21493+3-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
15493.810
|
10.826
|
6.500
|
11.429
|
17.143
|
24.286
|
75.714
|
8.571
|
2.857
|
41.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
485.109
|
330.086
|
323.355
|
540.301
|
741.169
|
611.291
|
617.451
|
373.287
|
192.383
|
651.712
|
454.857
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.261
|
0.574
|
0.850
|
0.423
|
-0.263
|
— |
-0.816
|
0.867
|
— | — | — | — | — |
No JSON data available for plots.