Hg_chrom9_TN10mRNA_17083
Organism: Heterodera glycines Gene Locus: chr9:2937626-2943175 Feature type: polypeptideProtein Sequence
Length: 1,166
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 0.977 | 1.154 | 0.887 | 1.701 | 0.946 | 0.633 | 1.286 | 0.858 | 1.507 | 0.988 | 1.463 | 1.525 | 0.643 | 1.26 | 0.943 | 0.815 | 0.923 | 0.66 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16138
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,LKKKAKPRKPR,KRKLLESVFEETEKELKKK,RKLLESVFEETEKELKKKA,RRHVAHRTNTKQWEKMRRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.629
|
0.077
|
0.008
|
0.364
|
0.079
|
0.074
|
0.091
|
0.002
|
0.073
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012660
|
1.000
|
1.000
|
Hsc_gene_13104.t1
|
Hsc_gene_13104.t1;Hsc_gene_13105.t1;Hsc_gene_13105.t2
|
— | — |
KAI3413474.1 transforming growth factor, beta receptor associated protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005634|GO:0006974|GO:0016192|GO:0031297
|
GO:0008150_0.961|GO:0005575_0.923|GO:0110165_0.921|GO:0009987_0.919|GO:0065007_0.872|GO:0005622_0.856|GO:0050789_0.851|GO:0016020_0.841|GO:0050794_0.832|GO:0050896_0.808|GO:0043226_0.797|GO:0051716_0.780|GO:0043229_0.774|GO:0007154_0.751|GO:0048519_0.750|GO:0023052_0.745|GO:0043227_0.734|GO:0048523_0.733|GO:0007165_0.729|GO:0006950_0.722|GO:0043231_0.705|GO:0035556_0.694|GO:0033554_0.693|GO:0007049_0.685|GO:0022402_0.685|GO:0051726_0.679|GO:0006974_0.678|GO:0010564_0.677|GO:0044770_0.673|GO:0000075_0.670|GO:0000077_0.670|GO:0010948_0.670|GO:0031570_0.670|GO:0042770_0.670|GO:0045786_0.670|GO:1901987_0.670|GO:1901988_0.670|GO:0005634_0.625
|
IPR001180+302-577+|IPR012923+71-150+|IPR019453+1051-1161+|IPR032914+316-1162+|IPR036322+310-568+
|
— |
PF07962+71-150+Replication_Fork_Protection_Component_Swi3|PF10367+1051-1161+Vacuolar_sorting_protein_39_domain_2
|
— |
PTHR12894+316-1162+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;146-224
|
2.000
|
79-145;225-1166
|
8ouw_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
132376.470
|
5.074
|
-30.000
|
31.818
|
9.949
|
51.286
|
48.714
|
15.266
|
16.552
|
45.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
2874.115
|
1756.214
|
1733.052
|
1615.852
|
1594.180
|
1293.989
|
2128.441
|
1583.353
|
2176.945
|
6552.141
|
4677.057
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.249
|
-0.257
|
— | — |
-0.286
|
0.729
|
— |
0.569
|
-1.695
|
— | — | — | — |
No JSON data available for plots.