Hg_chrom9_TN10mRNA_17084
Organism: Heterodera glycines Gene Locus: chr9:2943612-2948921 Feature type: polypeptideProtein Sequence
Length: 684
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.088 | 0.984 | 0.151 | 1.608 | 2.137 | 1.009 | 0.877 | 0.552 | 0.553 | 0.842 | 0.946 | 0.609 | 1.35 | 1.492 | 1.19 | 1.102 | 0.797 | 1.125 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16139
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RTKRGNRKKQQP,RRGGETYGRRDQPKEQRK,KKVNIDLEYNTSREISRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.376
|
0.124
|
0.011
|
0.821
|
0.128
|
0.048
|
0.077
|
0.007
|
0.053
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001458
|
2.000
|
3.000
|
Hsc_gene_13106.t1;Hsc_gene_13106.t2;Hsc_gene_13107.t1
|
Hsc_gene_13106.t1
|
— |
D5MCN2.2 La-related protein 1 [Caenorhabditis elegans]
|
KAF7637006.1 HTH La-type RNA-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.861|GO:0110165_0.859|GO:0005622_0.795|GO:0008150_0.756|GO:0003674_0.722|GO:0005488_0.722|GO:0043226_0.702|GO:0043229_0.669|GO:0016020_0.643|GO:0009987_0.634|GO:0065007_0.616|GO:0097159_0.614|GO:0003676_0.604|GO:0050789_0.602|GO:0003723_0.571|GO:0050794_0.552|GO:0005737_0.545
|
IPR006630+443-535_447-525_453-507+|IPR036388+441-530+|IPR036390+441-532+|IPR045180+126-665+
|
SM00715+447-525+
|
PF05383+453-507+La_domain
|
— |
PTHR22792+126-665+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-315;512-684
|
1.000
|
316-511
|
9ed0_h
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
76282.250
|
5.436
|
-9.000
|
29.678
|
8.041
|
57.749
|
42.251
|
14.620
|
15.058
|
52.924
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
greenyellow
|
829.306
|
675.500
|
566.422
|
475.137
|
647.542
|
734.583
|
1302.561
|
705.902
|
757.983
|
1144.359
|
978.769
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.484
|
-0.645
|
-0.144
|
0.415
|
0.196
|
0.838
|
— |
1.026
|
— | — | — | — | — |
No JSON data available for plots.