Hg_chrom9_TN10mRNA_17085
Organism: Heterodera glycines Gene Locus: chr9:2949991-2953792 Feature type: polypeptideProtein Sequence
Length: 627
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.15 | 0.899 | 0.165 | 1.728 | 2.167 | 1.025 | 0.718 | 0.496 | 0.625 | 0.87 | 0.938 | 0.62 | 1.319 | 1.595 | 1.071 | 1.124 | 0.749 | 0.981 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16140
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RTKRGNRKKQQP,RRGGETYGRRDQPKEQRK,KKVNIDLEYNTSREISRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.349
|
0.121
|
0.011
|
0.836
|
0.122
|
0.044
|
0.083
|
0.007
|
0.059
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001458
|
2.000
|
3.000
|
Hsc_gene_13106.t1;Hsc_gene_13106.t2;Hsc_gene_13107.t1
|
Hsc_gene_13107.t1
|
— |
D5MCN2.2 La-related protein 1 [Caenorhabditis elegans]
|
KAF7637006.1 HTH La-type RNA-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.864|GO:0110165_0.863|GO:0005622_0.798|GO:0008150_0.745|GO:0003674_0.731|GO:0005488_0.731|GO:0043226_0.705|GO:0043229_0.673|GO:0016020_0.639|GO:0009987_0.626|GO:0065007_0.614|GO:0097159_0.614|GO:0003676_0.605|GO:0050789_0.601|GO:0003723_0.577|GO:0050794_0.551|GO:0005737_0.546
|
IPR006630+386-478_390-468_396-450+|IPR036388+384-473+|IPR036390+384-475+|IPR045180+105-608+
|
SM00715+390-468+
|
PF05383+396-450+La_domain
|
— |
PTHR22792+105-608+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-279;455-627
|
1.000
|
280-454
|
9ed0_h
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
69772.300
|
5.549
|
-6.500
|
30.303
|
6.858
|
58.054
|
41.946
|
14.992
|
15.311
|
52.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
712.470
|
1141.703
|
517.677
|
484.183
|
548.875
|
427.530
|
1063.069
|
597.615
|
551.083
|
910.997
|
756.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.372
|
-1.375
|
— | — |
-0.347
|
1.327
|
0.380
|
0.975
|
— | — | — | — | — |
No JSON data available for plots.