SCN Proteipedia

Hg_chrom9_TN10mRNA_17086

Organism: Heterodera glycines Gene Locus: chr9:2954016-2958512 Feature type: polypeptide

Protein Sequence

Length: 1,091

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.863	0.959	1.017	0.411	1.451	1.575	0.6	1.467	1.12	1.003	0.861	1.564	1.273	1.445	1.403	0.759	0.661	0.75	1.199	0.944	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16141	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.979

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRKATDGGDRKRKLA,RKYVSIIVDAVEQRRREI	—	—	—	—	—	—	0.000	—	—	0.754	0.149	0.006	0.488	0.101	0.083	0.059	0.015	0.030	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012661	1.000	1.000	Hsc_gene_13108.t1	Hsc_gene_13108.t1	—	Q9U299.2 5'-3' exoribonuclease 2 homolog [Caenorhabditis elegans]	KAF7640190.1 5'-3' exoribonuclease [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0004527\|GO:0004534\|GO:0005634\|GO:0006139	GO:0008150_0.872\|GO:0005575_0.841\|GO:0003674_0.839\|GO:0110165_0.833\|GO:0009987_0.792\|GO:0005622_0.788\|GO:0043226_0.735\|GO:0008152_0.723\|GO:0044238_0.713\|GO:0043170_0.711\|GO:0043229_0.696\|GO:0016020_0.667\|GO:0006139_0.662\|GO:0090304_0.659\|GO:0003824_0.653\|GO:0016787_0.624\|GO:0016070_0.607\|GO:0065007_0.598\|GO:0016788_0.597\|GO:0140640_0.594\|GO:0044237_0.592\|GO:0004518_0.591\|GO:0050789_0.591\|GO:0140098_0.591\|GO:0009058_0.589\|GO:0004527_0.586\|GO:0004532_0.586\|GO:0004540_0.586\|GO:0008409_0.586\|GO:0016796_0.586\|GO:0016896_0.586\|GO:0043227_0.579\|GO:0044249_0.579\|GO:0050794_0.573\|GO:0009059_0.569\|GO:0010467_0.560\|GO:0043231_0.547\|GO:0005488_0.526\|GO:0004534_0.522\|GO:0005634_0.508	IPR004859+1-255+\|IPR017151+1-837_798-1089+\|IPR027073+1-1071+\|IPR041412+324-768_827-930+	—	PF03159+1-255+XRN_5'-3'_exonuclease_N-terminus\|PF17846+324-768_827-930+Xrn1_helical_domain	G3DSA:1.25.40.1050:FF:000002+638-739+5'-3'_exoribonuclease\|G3DSA:3.40.50.12390:FF:000001+150-371+5'-3'_exoribonuclease\|G3DSA:3.40.50.12390:FF:000003+1-136+5'-3'_exoribonuclease	PTHR12341+1-1071+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	407-522;761-843;925-1091	3.000	1-406;523-760;844-924	9exs_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.568	125555.000	6.366	-3.000	29.789	12.282	49.404	50.596	15.490	14.299	45.188

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2991.501	4645.942	3243.918	3350.919	3595.150	3687.100	3432.294	3094.477	2316.990	1956.398	2110.938

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.748	-0.609	0.155	—	—	—	-0.358	0.293	—	—	—	—	—

No JSON data available for plots.

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