Hg_chrom9_TN10mRNA_17089
Organism: Heterodera glycines Gene Locus: chr9:2963660-2964930 Feature type: polypeptideProtein Sequence
Length: 266
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.437 | 0.82 | 0.519 | 1.754 | 1.928 | 0.537 | 0.752 | 1.253 | 1.168 | 1.823 | 1.769 | 0.627 | 1.012 | 1.458 | 0.537 | 0.678 | 0.74 | 0.868 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16144
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KLREGRKRRKLTKAIKKL,KKQVTVDPEIAKLREGRKR,KKFGTGRLIKMPEFKKKQI
|
— | — |
14-40
|
0.915
|
— | — |
0.000
|
— | — |
0.144
|
0.981
|
0.013
|
0.091
|
0.051
|
0.015
|
0.029
|
0.007
|
0.052
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012664
|
1.000
|
1.000
|
Hsc_gene_13111.t1
|
Hsc_gene_13111.t1
|
— |
Q9Z2Q5.2 Large ribosomal subunit protein mL40 [Mus musculus]
|
KAK6100586.1 Mitochondrial ribosomal protein L28 family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005762
|
GO:0005575_0.933|GO:0110165_0.926|GO:0005622_0.908|GO:0043226_0.874|GO:0043229_0.855|GO:0016020_0.850|GO:0005737_0.805|GO:0043227_0.804|GO:0043231_0.779|GO:0043228_0.760|GO:0043232_0.760|GO:0031974_0.662|GO:0043233_0.662|GO:0070013_0.662|GO:0008150_0.581|GO:0005739_0.572|GO:0005840_0.572|GO:0005759_0.552|GO:0000313_0.545|GO:0005761_0.540|GO:0003674_0.517|GO:0005488_0.510
|
IPR019192+35-196+|IPR039145+37-197+
|
— |
PF09812+35-196+Mitochondrial_ribosomal_protein_L28
|
— |
PTHR13359+37-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
220-266
|
1.000
|
1-219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
30940.820
|
9.852
|
13.000
|
35.714
|
7.895
|
53.008
|
46.992
|
20.677
|
15.038
|
37.594
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.