Hg_chrom9_TN10mRNA_17090
Organism: Heterodera glycines Gene Locus: chr9:2965165-2968230 Feature type: polypeptideProtein Sequence
Length: 637
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.621 | 1.022 | 1.085 | 0.704 | 1.491 | 1.087 | 0.691 | 1.727 | 1.047 | 1.23 | 1.213 | 1.57 | 1.439 | 0.815 | 1.314 | 1.076 | 0.695 | 0.737 | 1.208 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16145
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,RKKK,RPRR,KPKRKRRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.856
|
0.232
|
0.008
|
0.358
|
0.017
|
0.044
|
0.033
|
0.007
|
0.037
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012665
|
1.000
|
1.000
|
Hsc_gene_13112.t1
|
Hsc_gene_13112.t1
|
— |
A5D979.1 DNA-dependent metalloprotease SPRTN [Bos taurus]
|
KAI1727869.1 sprT-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003697|GO:0004222|GO:0006974
|
GO:0008150_0.959|GO:0009987_0.912|GO:0050896_0.796|GO:0051716_0.779|GO:0006950_0.727|GO:0033554_0.700|GO:0006974_0.682|GO:0005575_0.608|GO:0110165_0.608|GO:0005622_0.574|GO:0008152_0.542|GO:0044238_0.542|GO:0043170_0.537|GO:0016020_0.536|GO:0043226_0.525|GO:0043229_0.502
|
IPR006640+67-238_70-179+|IPR042530+550-637+|IPR044245+52-389+
|
SM00731+67-238+
|
PF10263+70-179+SprT-like_family|PF22934+190-237+Spartan-like_zinc_binding_domain
|
— |
PTHR21220+52-389+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;224-338
|
2.000
|
20-223;339-637
|
6mdw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
73049.000
|
7.172
|
8.000
|
32.810
|
11.460
|
53.218
|
46.782
|
17.896
|
14.914
|
44.427
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1549.870
|
2368.257
|
1632.665
|
1383.677
|
1316.293
|
1111.163
|
1698.600
|
1609.614
|
586.642
|
2170.598
|
1491.759
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.766
|
-0.913
|
-0.130
|
— |
-0.230
|
0.623
|
0.428
|
0.221
|
— | — | — | — | — |
No JSON data available for plots.