SCN Proteipedia

Hg_chrom9_TN10mRNA_17099

Organism: Heterodera glycines Gene Locus: chr9:2982628-2984420 Feature type: polypeptide

Protein Sequence

Length: 325

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.501	1.002	0.559	0.849	0.923	0.631	0.806	2.308	1.368	1.497	0.746	1.991	1.88	0.592	1.068	0.879	0.504	1.305	2.604	1.357	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16152	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.980

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	—	44-64	0.999	—	—	—	—	0.000	—	—	0.197	0.127	0.036	0.184	0.841	0.360	0.635	0.031	0.195	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012669	1.000	1.000	Hsc_gene_13118.t1	Hsc_gene_13118.t1	—	Q09251.2 E3 ubiquitin ligase rnf-121 [Caenorhabditis elegans]	KAH7729841.1 zinc finger protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046872	GO:0008150_0.955\|GO:0005575_0.911\|GO:0110165_0.911\|GO:0009987_0.905\|GO:0003674_0.887\|GO:0016020_0.868\|GO:0071944_0.868\|GO:0005886_0.865\|GO:0050896_0.806\|GO:0051716_0.774\|GO:0005622_0.759\|GO:0005737_0.759\|GO:0008152_0.758\|GO:0003824_0.752\|GO:0044238_0.742\|GO:0005773_0.735\|GO:0043226_0.735\|GO:0043227_0.735\|GO:0043229_0.735\|GO:0043231_0.735\|GO:0042221_0.733\|GO:0019538_0.721\|GO:0043170_0.721\|GO:0006950_0.719\|GO:0012505_0.710\|GO:0016740_0.701\|GO:1901698_0.695\|GO:0009056_0.691\|GO:0033554_0.685\|GO:0009057_0.682\|GO:0048870_0.680\|GO:0006508_0.679\|GO:0016477_0.678\|GO:0030163_0.677\|GO:0034976_0.673\|GO:0140096_0.673\|GO:0016746_0.671\|GO:0010498_0.670\|GO:0036503_0.670\|GO:0040039_0.670\|GO:0051603_0.670\|GO:0031090_0.660\|GO:0016755_0.656\|GO:0019787_0.656\|GO:0004842_0.655\|GO:0061659_0.655\|GO:0061630_0.654\|GO:0005783_0.643\|GO:0031984_0.602\|GO:0098588_0.597\|GO:0005789_0.593\|GO:0042175_0.593\|GO:0098827_0.593\|GO:0005794_0.585\|GO:0000139_0.550\|GO:0016528_0.540\|GO:0016529_0.540\|GO:0033017_0.540	IPR001841+205-273_205-274+\|IPR013083+194-286+\|IPR018957+239-273+\|IPR040176+3-325+	SM00184+205-273+	PF00097+239-273+Zinc_finger,_C3HC4_type_(RING_finger)	—	PTHR13407+3-325+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-325	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.729	37967.330	8.466	12.500	23.385	19.385	39.385	60.615	14.769	8.615	41.846

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	yellow	1132.044	956.073	837.230	892.549	977.059	1257.426	1006.425	1281.048	973.186	1519.875	1285.580

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.420	-0.236	0.201	—	0.379	-0.312	—	-0.207	—	—	—	—	—

No JSON data available for plots.

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