SCN Proteipedia

Hg_chrom9_TN10mRNA_17100

Organism: Heterodera glycines Gene Locus: chr9:2985274-2987154 Feature type: polypeptide

Protein Sequence

Length: 472

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.468	1.38	1.541	0.731	0.883	1.304	0.706	0.318	1.46	1.403	0.738	1.62	2.06	0.937	1.081	0.938	0.799	1.027	0.326	0.499	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16153	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	32-66	0.971	—	—	—	—	0.000	—	—	0.854	0.232	0.004	0.482	0.107	0.128	0.074	0.006	0.057	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012670	1.000	1.000	Hsc_gene_13120.t1	Hsc_gene_13120.t1	—	Q9LRE5.1 DNA polymerase delta small subunit [Oryza sativa Japonica Group]	KAH7726293.1 pold2-prov protein [Aphelenchus avenae]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006260	GO:0008150_0.948\|GO:0005575_0.900\|GO:0110165_0.896\|GO:0009987_0.887\|GO:0005622_0.833\|GO:0016020_0.813\|GO:0008152_0.792\|GO:0043226_0.785\|GO:0044238_0.777\|GO:0044237_0.770\|GO:0043170_0.756\|GO:0009058_0.755\|GO:0043229_0.752\|GO:0044249_0.738\|GO:0043227_0.736\|GO:0009059_0.729\|GO:0043231_0.725\|GO:0006139_0.717\|GO:0034654_0.707\|GO:0090304_0.703\|GO:0141187_0.698\|GO:0006259_0.679\|GO:0071897_0.675\|GO:0032991_0.640\|GO:0005634_0.616\|GO:0043228_0.600\|GO:0043232_0.600\|GO:0031974_0.575\|GO:0043233_0.575\|GO:0070013_0.573\|GO:1902494_0.569\|GO:0031981_0.566\|GO:0140513_0.560\|GO:0005654_0.557\|GO:0140535_0.555\|GO:0061695_0.553\|GO:1990234_0.553\|GO:0005694_0.549\|GO:0000228_0.545\|GO:0000808_0.540\|GO:0000811_0.540\|GO:0005656_0.540\|GO:0005657_0.540\|GO:0008622_0.540\|GO:0030894_0.540\|GO:0031261_0.540\|GO:0032993_0.540\|GO:0033202_0.540\|GO:0036387_0.540\|GO:0042555_0.540\|GO:0042575_0.540\|GO:0043596_0.540\|GO:0043601_0.540\|GO:0043625_0.540\|GO:0071162_0.540\|GO:0097373_0.540	IPR007185+225-420+\|IPR024826+26-458+\|IPR040663+37-172+	—	PF04042+225-420+DNA_polymerase_alpha/epsilon_subunit_B\|PF18018+37-172+DNA_polymerase_delta_subunit_OB-fold_domain	—	PTHR10416+26-458+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-472	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.511	53380.980	4.547	-15.500	24.576	10.169	47.034	52.966	10.805	13.771	49.576

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	1768.812	3383.836	1331.265	1321.134	1555.467	1214.992	1356.224	1918.049	537.797	2804.844	1833.252

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.576	-1.494	0.098	0.204	-0.342	—	0.560	—	-2.490	—	—	—	—

No JSON data available for plots.

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