SCN Proteipedia

Hg_chrom9_TN10mRNA_17104

Organism: Heterodera glycines Gene Locus: chr9:2999583-3001970 Feature type: polypeptide

Protein Sequence

Length: 543

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	0.942	0.971	0.254	1.78	1.039	0.658	0.921	0.818	0.846	0.977	1.625	1.432	0.85	2.18	0.868	0.996	1.005	0.708	0.379	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16157	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	GKEQMGEKREEKGEEKEQQKREETGKMGEKREEMRERGGKEQQKEPQRKKK	—	—	—	—	—	—	0.000	—	—	0.397	0.182	0.041	0.492	0.085	0.051	0.111	0.037	0.154	0.236

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012674	1.000	1.000	Hsc_gene_13124.t1	—	—	O17972.2 Nephrocystin-1-like protein [Caenorhabditis elegans]	KAH7721456.1 CBN-NPH-1 protein [Aphelenchus avenae]	No	-0.110

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.943\|GO:0005575_0.933\|GO:0110165_0.932\|GO:0009987_0.905\|GO:0005622_0.878\|GO:0016020_0.869\|GO:0065007_0.855\|GO:0043226_0.837\|GO:0050789_0.832\|GO:0043229_0.815\|GO:0050794_0.810\|GO:0032501_0.785\|GO:0050896_0.783\|GO:0071840_0.778\|GO:0016043_0.772\|GO:0043227_0.770\|GO:0051716_0.760\|GO:0051179_0.758\|GO:0071944_0.747\|GO:0006810_0.744\|GO:0051234_0.744\|GO:0005886_0.739\|GO:0007154_0.725\|GO:0006996_0.721\|GO:0023052_0.721\|GO:0051641_0.714\|GO:0007165_0.709\|GO:0044085_0.709\|GO:0043228_0.701\|GO:0043232_0.701\|GO:0051649_0.699\|GO:0030030_0.698\|GO:0120036_0.698\|GO:0008104_0.696\|GO:0033036_0.696\|GO:0070727_0.696\|GO:0022414_0.694\|GO:0022607_0.694\|GO:0032991_0.693\|GO:0007017_0.691\|GO:0007010_0.690\|GO:0016192_0.688\|GO:0007018_0.686\|GO:0046907_0.686\|GO:0000226_0.683\|GO:0070925_0.682\|GO:0030031_0.681\|GO:0030705_0.681\|GO:0048193_0.681\|GO:0048609_0.681\|GO:0051640_0.681\|GO:0051656_0.681\|GO:0120031_0.681\|GO:0033365_0.680\|GO:0010970_0.679\|GO:0099111_0.679\|GO:0051648_0.678\|GO:0051650_0.678\|GO:0001578_0.677\|GO:0005929_0.677\|GO:0006903_0.677\|GO:0030990_0.677\|GO:0031503_0.677\|GO:0035082_0.677\|GO:0035735_0.677\|GO:0042073_0.677\|GO:0042995_0.677\|GO:0044782_0.677\|GO:0048199_0.677\|GO:0060271_0.677\|GO:0061512_0.677\|GO:0097712_0.677\|GO:0098590_0.677\|GO:0120025_0.677\|GO:1905349_0.677\|GO:0007610_0.676\|GO:0007617_0.670\|GO:0008340_0.670\|GO:0019098_0.670\|GO:0023041_0.670\|GO:0034606_0.670\|GO:0034607_0.670\|GO:0060179_0.670\|GO:1905515_0.670\|GO:0005856_0.600\|GO:0015630_0.571\|GO:0005815_0.556\|GO:0140535_0.553\|GO:0035869_0.540\|GO:0036064_0.540\|GO:0097539_0.540\|GO:0097546_0.540\|GO:0097730_0.540	—	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-186	1.000	187-543	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.695	62439.450	9.207	11.000	34.991	9.208	55.249	44.751	18.969	16.022	46.225

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	121.169	262.879	215.121	98.464	43.748	36.319	87.492	102.072	18.218	199.164	121.616

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.519	-1.554	-1.018	-1.202	—	1.280	1.385	—	—	—	—	—	—

No JSON data available for plots.

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