Hg_chrom9_TN10mRNA_17106
Organism: Heterodera glycines Gene Locus: chr9:3007020-3009104 Feature type: polypeptideProtein Sequence
Length: 451
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.031 | 1.048 | 0.153 | 0.813 | 0.91 | 0.792 | 1.552 | 1.33 | 1.288 | 0.873 | 1.043 | 1.786 | 0.853 | 0.679 | 1.14 | 0.691 | 1.344 | 0.341 | 0.978 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16159
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-20
|
0.996
|
0.999
|
1.000
|
1.000
|
0.076
|
0.101
|
0.122
|
0.213
|
0.929
|
0.366
|
0.633
|
0.106
|
0.194
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012675
|
1.000
|
1.000
|
Hsc_gene_532.t1
|
Hsc_gene_532.t1
|
— |
B1H3C9.1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [Xenopus tropicalis]
|
KAI1726707.1 oligosaccharyltransferase 48 kDa subunit beta domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0018279
|
GO:0005575_0.900|GO:0110165_0.896|GO:0016020_0.823|GO:0071944_0.763|GO:0005886_0.737|GO:0005622_0.706|GO:0005737_0.671|GO:0043226_0.649|GO:0008150_0.641|GO:0043229_0.641|GO:0043227_0.624|GO:0043231_0.610|GO:0009987_0.574|GO:0005773_0.520|GO:0008152_0.504|GO:0012505_0.502
|
IPR005013+10-428_22-427+
|
— |
PF03345+22-427+Oligosaccharyltransferase_48_kDa_subunit_beta
|
— |
PTHR10830+10-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
9ygy_N2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
49632.740
|
6.504
|
0.000
|
22.838
|
13.304
|
43.016
|
56.984
|
12.195
|
10.643
|
51.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
2490.542
|
1651.403
|
1709.332
|
2780.620
|
4108.970
|
4100.909
|
4335.559
|
2199.118
|
489.719
|
2696.616
|
1750.803
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.179
|
0.615
|
0.810
|
0.531
|
— | — |
-1.003
|
1.121
|
-2.583
|
— | — | — | — |