Hg_chrom9_TN10mRNA_17107
Organism: Heterodera glycines Gene Locus: chr9:3009219-3011174 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.555 | 1.013 | 1.396 | 0.429 | 2.04 | 0.958 | 0.815 | 1.037 | 0.876 | 0.533 | 1.195 | 0.61 | 0.692 | 1.117 | 2.032 | 1.66 | 1.054 | 0.472 | 0.16 | 0.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRGKSAESIDRGKDK,RRIVYGFINGISKKRIV,KKTHKRNSRKGSKKKRGRG,RKTRWGPMLEEKSEAKKRR,RKQLADEVLDSLDVRTRNR,GPMLEEKSEAKKRRREKPTARESGGRHRRRGKSAESIDRGK
|
40-62
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.957
|
0.075
|
0.007
|
0.236
|
0.035
|
0.009
|
0.093
|
0.011
|
0.089
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012676
|
1.000
|
1.000
|
Hsc_gene_533.t1
|
— | — | — |
CAK5035455.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-163;209-482
|
1.000
|
164-208
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
54086.800
|
5.789
|
-5.000
|
39.834
|
5.394
|
65.975
|
34.025
|
19.917
|
19.917
|
51.867
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1159.929
|
2311.003
|
1793.660
|
1281.093
|
1163.930
|
877.563
|
1259.419
|
935.622
|
1261.708
|
520.048
|
837.903
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.596
|
-0.988
|
-0.376
|
-0.170
|
-0.393
|
0.534
|
— |
0.574
|
— | — | — | — | — |
No JSON data available for plots.