Hg_chrom9_TN10mRNA_17111
Organism: Heterodera glycines Gene Locus: chr9:3018205-3021955 Feature type: polypeptideProtein Sequence
Length: 521
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.294 | 1.221 | 0.662 | 1.216 | 0.787 | 0.685 | 2.015 | 1.45 | 1.193 | 1.047 | 2.145 | 1.173 | 0.849 | 1.214 | 0.905 | 0.503 | 0.872 | 0.738 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16164
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKVFKFMLEKNDGWLKKKL
|
43-81
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.877
|
0.157
|
0.007
|
0.419
|
0.033
|
0.062
|
0.013
|
0.015
|
0.068
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012677
|
1.000
|
1.000
|
Hsc_gene_534.t1
|
— | — |
Q0VCA5.1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [Bos taurus]
|
KAH7697432.1 SAM domain and HD domain-containing protein 1-like protein, partial [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.943|GO:0008152_0.827|GO:0009987_0.748|GO:0003674_0.746|GO:0044237_0.672|GO:0044238_0.672|GO:0009058_0.655|GO:0003824_0.650|GO:0016787_0.569|GO:0005575_0.553|GO:0065007_0.550|GO:0110165_0.549|GO:0016788_0.542|GO:0050789_0.538|GO:0005622_0.520|GO:0043170_0.512|GO:0050896_0.507|GO:0044249_0.501
|
IPR003607+62-225_64-233+|IPR006674+66-150+|IPR050135+19-426+
|
SM00471+62-225+
|
PF01966+66-150+HD_domain
|
— |
PTHR11373+19-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
471-521
|
1.000
|
1-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
59433.950
|
6.865
|
4.500
|
30.902
|
11.900
|
48.944
|
51.056
|
16.891
|
14.012
|
45.873
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
465.612
|
347.747
|
450.261
|
455.024
|
419.490
|
643.590
|
1299.795
|
467.775
|
289.069
|
288.872
|
288.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.251
|
— | — |
0.631
|
1.025
|
-0.571
|
1.619
|
— | — | — | — | — |
No JSON data available for plots.