Hg_chrom9_TN10mRNA_17114
Organism: Heterodera glycines Gene Locus: chr9:3032180-3037012 Feature type: polypeptideProtein Sequence
Length: 812
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 1.002 | 0.851 | 1.147 | 0.718 | 1.105 | 0.806 | 0.8 | 1.204 | 1.115 | 0.392 | 1.087 | 1.471 | 1.989 | 2.061 | 1.126 | 1.191 | 0.634 | 0.474 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16167
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KEKREREESAKKGRR,KREREESAKKGRRCRRT,KRTEKADGDGTKEKRERE
|
27-48
|
0.997
|
— | — | — | — |
0.079
|
— | — |
0.108
|
0.071
|
0.040
|
0.172
|
0.105
|
0.153
|
0.128
|
0.021
|
0.285
|
0.804
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012680
|
1.000
|
1.000
|
Hsc_gene_537.t1
|
Hsc_gene_537.t1
|
— |
Q23490.1 Peroxidase mlt-7 [Caenorhabditis elegans]
|
KAI1731361.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.886|GO:0009987_0.836|GO:0005575_0.784|GO:0110165_0.779|GO:0003674_0.716|GO:0050896_0.642|GO:0051716_0.592|GO:0003824_0.529|GO:0042221_0.514
|
IPR003582+74-109_74-110_75-109+|IPR010255+272-812+|IPR019791+265-812_278-791_302-313_349-364_481-499_499-519_524-550_577-587_696-716_767-781+|IPR037120+255-812+|IPR050702+59-812+
|
SM00254+74-110+
|
PF01549+74-109+ShK_domain-like|PF03098+278-791+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000007+258-812+Peroxidase_mlt-7
|
PTHR11475+59-812+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;113-257
|
2.000
|
29-112;258-812
|
8ogi_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
90625.540
|
9.563
|
36.500
|
23.276
|
9.113
|
47.044
|
52.956
|
14.286
|
8.990
|
54.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
1413.323
|
621.667
|
99.919
|
1474.640
|
4556.354
|
4925.885
|
1909.278
|
1957.467
|
18.127
|
340.241
|
202.192
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.869
|
1.109
|
3.994
|
1.596
|
— |
-1.358
|
-1.446
|
— |
-4.330
|
6.526
|
4.242
|
— | — |
No JSON data available for plots.