Hg_chrom9_TN10mRNA_17116
Organism: Heterodera glycines Gene Locus: chr9:3048994-3055481 Feature type: polypeptideProtein Sequence
Length: 804
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.143 | 0.752 | 0.656 | 0.6 | 1.513 | 2.169 | 1.288 | 1.368 | 0.525 | 0.874 | 0.678 | 1.244 | 0.622 | 1.339 | 1.371 | 1.439 | 0.734 | 0.584 | 0.287 | 0.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16169
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PPMKRTK,RREEEEGEGRTVIRRVGK,KKGDGGGEKRGGGSRKRRR,KGDGGGEKRGGGSRKRRRKPEA
|
— | — |
5-26
|
1.000
|
— | — |
0.000
|
— | — |
0.934
|
0.152
|
0.055
|
0.349
|
0.072
|
0.021
|
0.025
|
0.018
|
0.042
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002548
|
1.000
|
3.000
|
Hsc_gene_541.t1;Hsc_gene_541.t2;Hsc_gene_541.t3
|
Hsc_gene_541.t1;Hsc_gene_541.t2
|
— |
O02274.3 Zinc finger protein ztf-11 [Caenorhabditis elegans]
|
KHJ76179.1 zinc finger, C2HC type, partial [Oesophagostomum dentatum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006355|GO:0008270
|
GO:0005575_0.924|GO:0110165_0.920|GO:0008150_0.875|GO:0005622_0.853|GO:0009987_0.828|GO:0065007_0.825|GO:0050789_0.812|GO:0050794_0.795|GO:0043226_0.789|GO:0043229_0.781|GO:0008152_0.727|GO:0043170_0.727|GO:0019222_0.726|GO:0031323_0.726|GO:0044237_0.726|GO:0044238_0.721|GO:0080090_0.721|GO:0060255_0.720|GO:0009058_0.717|GO:0009059_0.717|GO:0010467_0.717|GO:0044249_0.717|GO:0009889_0.704|GO:0010556_0.704|GO:0031326_0.704|GO:0006139_0.703|GO:0016070_0.701|GO:0090304_0.701|GO:0016020_0.697|GO:0032774_0.697|GO:0034654_0.697|GO:0141187_0.697|GO:0010468_0.695|GO:0003674_0.687|GO:0005488_0.687|GO:0019219_0.682|GO:0051252_0.682|GO:0006351_0.672|GO:0006355_0.670|GO:2001141_0.670|GO:0048519_0.618|GO:0048523_0.603|GO:0043227_0.602|GO:0043231_0.586|GO:0006357_0.575|GO:0006366_0.575|GO:0005634_0.574|GO:0032502_0.527|GO:0048856_0.527|GO:0032501_0.514|GO:0097159_0.512|GO:0003676_0.507
|
IPR002515+338-381_347-373_384-427_392-420+|IPR036060+346-378_390-425+
|
— |
PF01530+347-373_392-420+Zinc_finger,_C2HC_type
|
G3DSA:4.10.320.30:FF:000001+346-378_392-425+Myelin_transcription_factor_1-like,_a
|
PTHR10816+244-744+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-804
|
0.000
|
— |
2mf8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
85715.480
|
6.438
|
-1.000
|
26.617
|
5.721
|
52.861
|
47.139
|
13.930
|
12.687
|
54.602
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
474.103
|
801.214
|
741.215
|
318.599
|
252.843
|
209.218
|
304.714
|
396.726
|
1098.998
|
115.754
|
537.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.342
|
-1.468
|
-1.109
|
-0.365
|
-0.259
|
0.552
|
0.823
|
— | — | — | — | — | — |
No JSON data available for plots.