Hg_chrom9_TN10mRNA_17117
Organism: Heterodera glycines Gene Locus: chr9:3056076-3061006 Feature type: polypeptideProtein Sequence
Length: 1,039
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.683 | 1.701 | 0.805 | 0.465 | 0.818 | 1.209 | 0.607 | 0.674 | 1.198 | 1.938 | 0.919 | 1.585 | 1.337 | 1.24 | 0.982 | 1.224 | 0.789 | 0.802 | 0.666 | 0.255 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16170
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.868
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRSR,KRVK
|
59-91
|
0.946
|
— | — | — | — |
0.000
|
— | — |
0.195
|
0.054
|
0.029
|
0.237
|
0.196
|
0.510
|
0.303
|
0.167
|
0.832
|
0.263
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012682
|
1.000
|
1.000
|
Hsc_gene_542.t1
|
Hsc_gene_542.t1
|
— |
P90920.2 Leucine-rich repeat-containing protein egg-6 [Caenorhabditis elegans]
|
KAI6203127.1 Leucine Rich repeat-containing domain protein [Aphelenchoides besseyi];KAI6225967.1 Leucine Rich repeat-containing domain protein [Aphelenchoides besseyi]
|
No
|
-0.730
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.784|GO:0110165_0.784|GO:0008150_0.770|GO:0009987_0.624|GO:0032501_0.591|GO:0032502_0.582|GO:0048856_0.582|GO:0007275_0.543|GO:0016020_0.508
|
IPR000225+414-443+|IPR001611+205-226_323-383_466-525+|IPR003591+225-248_249-272_275-297_322-345_346-369_370-391_392-415_416-439_440-463_464-487_488-511_512-535+|IPR026906+182-257_388-449+|IPR032675+119-380_381-467_468-601+|IPR050328+111-341+
|
SM00369+225-248_249-272_275-297_322-345_346-369_370-391_392-415_416-439_440-463_464-487_488-511_512-535+
|
PF13306+182-257_388-449+BspA_type_Leucine_rich_repeat_region_(6_copies)|PF13855+323-383_466-525+Leucine_rich_repeat
|
G3DSA:3.80.10.10:FF:001164+292-455+GH01279p
|
PTHR24373+111-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
769-831
|
2.000
|
1-768;832-1039
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
115593.820
|
9.277
|
23.000
|
21.559
|
7.892
|
46.968
|
53.032
|
12.223
|
9.336
|
49.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1155.821
|
325.658
|
231.677
|
181.060
|
2084.927
|
3078.991
|
4107.415
|
464.461
|
40.240
|
1098.717
|
645.084
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.722
|
-0.984
|
-0.245
|
3.493
|
0.579
|
0.426
|
-2.846
|
3.292
|
-4.927
|
— | — | — | — |
No JSON data available for plots.