SCN Proteipedia

Hg_chrom9_TN10mRNA_17119

Organism: Heterodera glycines Gene Locus: chr9:3064000-3065987 Feature type: polypeptide

Protein Sequence

Length: 527

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.574	1.191	1.622	0.589	1.518	0.876	0.61	1.328	0.886	1.231	1.351	1.786	1.054	0.62	1.51	0.759	0.653	1.064	0.146	0.893	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16172	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.776

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	GESSSARKARKETVKDEKREKRAEKVPKKVKKRKDKLRKTGRK	—	—	—	—	—	—	0.000	—	—	0.557	0.201	0.011	0.697	0.136	0.037	0.094	0.002	0.051	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012684	1.000	1.000	Hsc_gene_544.t1	Hsc_gene_544.t1	—	O44959.5 Serine/threonine-protein kinase RIO1 [Caenorhabditis elegans]	KAF7624755.1 Serine/threonine-protein kinase RIO1 [Meloidogyne graminicola]	No	-0.230

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004674\|GO:0005524	GO:0005575_0.902\|GO:0110165_0.902\|GO:0005622_0.866\|GO:0008150_0.768\|GO:0009987_0.697\|GO:0065007_0.633\|GO:0005737_0.632\|GO:0050789_0.618\|GO:0050794_0.600\|GO:0008152_0.587\|GO:0044238_0.587\|GO:0043170_0.585\|GO:0016020_0.583\|GO:0043226_0.578\|GO:0071840_0.578\|GO:0009058_0.577\|GO:0044237_0.575\|GO:0043229_0.570\|GO:0009059_0.560\|GO:0044249_0.560\|GO:0010467_0.549\|GO:0006139_0.543\|GO:0048518_0.527\|GO:0019222_0.526\|GO:0090304_0.525\|GO:0034654_0.523\|GO:0043227_0.520\|GO:0031323_0.516\|GO:0141187_0.514\|GO:0060255_0.510\|GO:0016070_0.509\|GO:0032774_0.506\|GO:0044085_0.502	IPR000687+115-352+\|IPR011009+147-333+\|IPR017407+4-527+\|IPR018935+285-296+\|IPR051272+34-524+	SM00090+115-352+	PF01163+157-338+RIO1_family	G3DSA:3.30.200.20:FF:000148+143-244+Serine/threonine-protein_kinase_RIO1	PTHR45723+34-524+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;397-527	1.000	3-396	4otp_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.548	60891.980	6.295	-2.000	37.002	9.677	54.839	45.161	18.975	18.027	45.351

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkturquoise	2221.706	3679.045	1489.101	2366.910	2437.124	1944.088	1491.114	1622.764	2601.773	2132.327	2333.518

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.535	-0.773	0.777	—	-0.311	-0.372	-0.365	—	—	—	—	—	—

No JSON data available for plots.

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