Hg_chrom9_TN10mRNA_17121
Organism: Heterodera glycines Gene Locus: chr9:3069043-3070596 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.416 | 1.116 | 0.738 | 0.382 | 1.353 | 0.757 | 0.527 | 1.107 | 0.82 | 1.346 | 0.895 | 1.085 | 1.948 | 0.568 | 1.28 | 0.949 | 0.605 | 1.398 | 0.568 | 0.651 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16174
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.533
|
0.209
|
0.028
|
0.682
|
0.145
|
0.082
|
0.073
|
0.043
|
0.096
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012686
|
1.000
|
1.000
|
Hsc_gene_546.t1
|
Hsc_gene_546.t1
|
— |
P35270.1 Sepiapterin reductase [Homo sapiens]
|
KAI1728381.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.781|GO:0008150_0.744|GO:0005575_0.699|GO:0110165_0.694|GO:0005622_0.603|GO:0008152_0.580|GO:0005737_0.578|GO:0003824_0.573|GO:0016020_0.554|GO:0009987_0.535|GO:0016491_0.513
|
IPR002347+13-30_14-218_98-109_176-195_195-212+|IPR036291+12-264+|IPR051721+10-270+
|
— |
PF00106+14-218+short_chain_dehydrogenase
|
— |
PTHR44085+10-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-271
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
30325.790
|
7.401
|
3.000
|
26.568
|
12.177
|
44.649
|
55.351
|
14.391
|
12.177
|
49.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
949.615
|
1420.856
|
825.263
|
732.928
|
642.073
|
680.645
|
688.259
|
1030.599
|
1281.846
|
935.446
|
1083.903
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.013
|
-1.092
|
— |
-0.223
|
— | — |
0.496
|
-0.440
|
— | — | — | — | — |
No JSON data available for plots.