Hg_chrom9_TN10mRNA_17122
Organism: Heterodera glycines Gene Locus: chr9:3070938-3073072 Feature type: polypeptideProtein Sequence
Length: 527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 1.015 | 1.208 | 1.112 | 0.696 | 1.022 | 0.7 | 1.423 | 1.855 | 1.462 | 0.891 | 1.005 | 1.476 | 0.657 | 1.123 | 1.03 | 0.778 | 1.121 | 0.73 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16175
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— |
LGEV,KKLFDIPSLDGFERLKNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.174
|
0.358
|
0.046
|
0.570
|
0.243
|
0.603
|
0.417
|
0.058
|
0.236
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012687
|
1.000
|
1.000
|
Hsc_gene_547.t1
|
Hsc_gene_547.t1
|
— |
A8E7C5.1 Phosphatidylinositide phosphatase SAC2 [Danio rerio]
|
KAF7640188.1 SAC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0008150_0.875|GO:0005575_0.844|GO:0110165_0.844|GO:0009987_0.754|GO:0005622_0.718|GO:0005737_0.684|GO:0003674_0.671|GO:0016020_0.647|GO:0008152_0.596|GO:0043226_0.579|GO:0043229_0.579|GO:0044238_0.579|GO:0044237_0.571|GO:0003824_0.569|GO:0071944_0.552|GO:0005886_0.515
|
IPR002013+50-367_146-472+
|
— |
PF02383+50-367+SacI_homology_domain
|
— |
PTHR45662+1-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-527
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
59528.940
|
7.817
|
10.500
|
25.047
|
11.765
|
45.351
|
54.649
|
14.231
|
10.816
|
47.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1336.437
|
1198.103
|
1103.690
|
1042.487
|
1029.982
|
1047.958
|
1278.684
|
1564.622
|
1939.283
|
1292.876
|
1569.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.347
|
-0.338
|
— | — | — |
0.296
|
0.475
|
— | — | — | — | — | — |
No JSON data available for plots.