Hg_chrom9_TN10mRNA_17124
Organism: Heterodera glycines Gene Locus: chr9:3077354-3078607 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.021 | 0.794 | 1.33 | 0.168 | 2.114 | 0.876 | 0.581 | 0.488 | 1.301 | 0.791 | 1.774 | 1.148 | 0.407 | 0.657 | 0.796 | 1.185 | 0.96 | 1.33 | 0.0 | 0.287 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16177
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.431
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
RKSK,RSEKKARK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.138
|
0.046
|
0.694
|
0.483
|
0.062
|
0.417
|
0.039
|
0.161
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012689
|
1.000
|
1.000
|
Hsc_gene_549.t1
|
Hsc_gene_549.t1
|
— |
Q86S66.2 Nascent polypeptide-associated complex subunit alpha [Caenorhabditis elegans]
|
KAI1728378.1 NAC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005854
|
GO:0005575_0.922|GO:0110165_0.913|GO:0005622_0.809|GO:0005737_0.702|GO:0043226_0.609|GO:0016020_0.578|GO:0043229_0.547|GO:0008150_0.540|GO:0043227_0.504
|
IPR002715+63-128_66-121_66-122+|IPR016641+7-205+|IPR038187+77-129+|IPR044034+165-204+
|
SM01407+66-122+
|
PF01849+66-121+NAC_domain|PF19026+165-204+HYPK_UBA_domain
|
G3DSA:1.10.8.10:FF:000006+166-203+Putative_nascent_polypeptide-associated_complex_subunit_alpha|G3DSA:2.20.70.30:FF:000002+73-125+Nascent_polypeptide-associated_complex_(NAC),_alpha_subunit
|
PTHR21713+7-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-73
|
1.000
|
74-205
|
3mce_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
22516.300
|
4.723
|
-8.000
|
36.585
|
3.415
|
57.561
|
42.439
|
16.585
|
20.000
|
51.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
5052.409
|
3662.990
|
3529.515
|
5772.656
|
5951.793
|
5629.826
|
4383.184
|
4910.182
|
5414.267
|
5353.534
|
5379.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.283
|
0.519
|
0.819
|
— | — |
-0.350
|
-0.302
|
— | — | — | — | — | — |
No JSON data available for plots.