Hg_chrom9_TN10mRNA_17128
Organism: Heterodera glycines Gene Locus: chr9:3087442-3089862 Feature type: polypeptideProtein Sequence
Length: 414
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 1.741 | 0.659 | 1.166 | 0.765 | 1.796 | 0.575 | 1.932 | 1.449 | 1.404 | 0.732 | 1.137 | 1.476 | 0.743 | 1.331 | 0.863 | 0.396 | 1.281 | 0.186 | 1.066 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16181
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.857
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.633
|
0.256
|
0.004
|
0.643
|
0.113
|
0.180
|
0.083
|
0.008
|
0.101
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012692
|
1.000
|
1.000
|
Hsc_gene_553.t1
|
Hsc_gene_553.t1
|
— |
Q09312.1 Fem-3 mRNA-binding factor 2 [Caenorhabditis elegans]
|
KAI1725056.1 pumilio domain-containing protein 5 [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0008150_0.804|GO:0005575_0.779|GO:0110165_0.778|GO:0005622_0.706|GO:0005737_0.652|GO:0009987_0.646|GO:0065007_0.633|GO:0050789_0.623|GO:0003674_0.581|GO:0005488_0.506|GO:0050794_0.504
|
IPR001313+82-121_86-121_91-121_122-157_132-156_159-195_167-186_209-222_254-290_258-276_292-325_296-319_342-377_353-364+|IPR011989+40-413+|IPR016024+61-408+|IPR033133+14-413+
|
SM00025+86-121_122-157_159-195_254-290_292-325_342-377+
|
PF00806+91-121_132-156_167-186_209-222_258-276_296-319_353-364+Pumilio-family_RNA_binding_repeat
|
— |
PTHR12537+50-408+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-414
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
47556.940
|
9.002
|
21.000
|
23.430
|
13.043
|
46.377
|
53.623
|
15.217
|
8.213
|
45.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
black
|
906.095
|
61.589
|
226.830
|
195.428
|
627.141
|
1632.869
|
4417.548
|
1291.543
|
9.675
|
787.053
|
453.891
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.648
|
1.530
|
— |
1.651
|
1.394
|
1.446
|
— |
1.920
|
— | — | — | — | — |
No JSON data available for plots.