Hg_chrom9_TN10mRNA_17133
Organism: Heterodera glycines Gene Locus: chr9:3098712-3099408 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.329 | 0.997 | 0.779 | 0.493 | 1.071 | 0.916 | 0.68 | 0.714 | 1.587 | 1.448 | 1.082 | 1.261 | 0.794 | 0.549 | 0.292 | 1.633 | 0.82 | 1.515 | 0.0 | 0.21 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16186
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
33-53
|
0.984
|
— | — |
0.000
|
— | — |
0.059
|
0.919
|
0.009
|
0.226
|
0.050
|
0.017
|
0.068
|
0.036
|
0.021
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012694
|
1.000
|
1.000
|
Hsc_gene_557.t1
|
Hsc_gene_557.t1
|
— |
Q09544.1 ATP synthase subunit delta, mitochondrial [Caenorhabditis elegans]
|
KAF7629861.1 ATP-synt_DE_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015986|GO:0045261|GO:0046933
|
GO:0005575_0.925|GO:0110165_0.917|GO:0016020_0.821|GO:0005622_0.800|GO:0005737_0.786|GO:0043226_0.739|GO:0043229_0.718|GO:0043227_0.696|GO:0043231_0.688|GO:0008150_0.559|GO:0005739_0.540
|
IPR001469+5-136_7-132_7-136+|IPR020546+10-87+|IPR036771+5-137_7-88+
|
— |
PF02823+10-87+ATP_synthase,_Delta/Epsilon_chain,_beta-sandwich_domain
|
— |
PTHR13822+7-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
9bpg_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
14715.970
|
5.147
|
-2.000
|
20.714
|
5.000
|
45.000
|
55.000
|
10.000
|
10.714
|
56.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
2406.457
|
534.061
|
1321.530
|
2092.934
|
2836.823
|
2131.496
|
1281.798
|
1408.889
|
509.580
|
5793.238
|
3528.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.077
|
1.834
|
0.772
|
0.407
|
-0.398
|
-0.723
|
-0.705
|
— |
-3.601
|
— | — | — | — |
No JSON data available for plots.