SCN Proteipedia

Hg_chrom9_TN10mRNA_17134

Organism: Heterodera glycines Gene Locus: chr9:3099632-3101356 Feature type: polypeptide

Protein Sequence

Length: 446

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.913	1.095	1.141	0.696	1.121	1.265	0.961	0.897	0.947	0.939	0.611	2.506	1.432	0.862	0.915	0.865	0.956	1.121	0.69	1.121	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16187	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRISEQFTAMFRRKAF	—	—	—	—	—	—	0.000	—	—	0.371	0.271	0.155	0.685	0.102	0.181	0.157	0.074	0.160	0.133

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000302	5.000	4.000	Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1;Hsc_gene_5981.t1	Hsc_gene_11418.t1;Hsc_gene_18906.t1;Hsc_gene_558.t1	C36E8.5;C54C6.2;K01G5.7	P18241.1 Tubulin beta-1 chain [Brugia pahangi]	KAF7640230.1 Tubulin beta chain [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.780\|GO:0110165_0.776\|GO:0008150_0.747\|GO:0005622_0.632\|GO:0009987_0.607\|GO:0016020_0.586\|GO:0043226_0.544\|GO:0003674_0.505	IPR000217+1-426_10-30_51-70_93-104_106-130_132-150_151-172_176-189_190-210_370-398+\|IPR002453+41-58_88-99_108-126_152-164_212-224_230-239_245-258_265-281_311-329_329-343_347-370_377-388_412-430+\|IPR003008+3-211_47-244+\|IPR008280+244-429+\|IPR013838+1-4+\|IPR017975+140-146+\|IPR018316+246-383_261-382+\|IPR023123+374-443+\|IPR036525+1-243_1-263+\|IPR037103+264-373+	SM00864+47-244+\|SM00865+246-383+	PF00091+3-211+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+261-382+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000006+374-444+Tubulin_beta_chain\|G3DSA:3.30.1330.20:FF:000002+264-373+Tubulin_beta_chain\|G3DSA:3.40.50.1440:FF:000003+1-263+Tubulin_beta_chain	PTHR11588+1-426+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	434-446	1.000	1-433	9ijj_Mv	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.579	49574.990	4.593	-16.000	23.318	11.659	44.843	55.157	10.314	13.004	52.691

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	white	2724.419	3467.883	1738.679	5282.928	5916.088	3296.994	7095.067	2258.431	430.465	700.460	584.748

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.227	0.470	1.713	0.131	-0.828	1.116	-0.653	1.795	—	3.805	3.398	—	—

No JSON data available for plots.

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