Hg_chrom9_TN10mRNA_17136
Organism: Heterodera glycines Gene Locus: chr9:3105770-3108136 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 0.812 | 0.437 | 0.979 | 0.691 | 1.568 | 0.702 | 1.747 | 0.825 | 1.977 | 0.099 | 0.899 | 0.91 | 0.714 | 1.693 | 1.185 | 0.895 | 1.456 | 1.512 | 0.642 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16189
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRNGVAKFAHRCHRRRRSQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.061
|
0.107
|
0.009
|
0.113
|
0.316
|
0.184
|
0.148
|
0.029
|
0.848
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012696
|
1.000
|
1.000
|
Hsc_gene_561.t1
|
Hsc_gene_561.t1
|
— | — |
KAI1728548.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.962|GO:0009987_0.931|GO:0065007_0.912|GO:0050789_0.892|GO:0050794_0.878|GO:0050896_0.847|GO:0007154_0.843|GO:0023052_0.843|GO:0051716_0.828|GO:0007165_0.812|GO:0007186_0.749|GO:0003674_0.644|GO:0038023_0.596|GO:0060089_0.596|GO:0005488_0.577|GO:0004888_0.558
|
IPR000276+47-71_63-334_80-101_130-152_136-152_307-331_347-373+|IPR017452+62-365+|IPR052954+42-435+
|
— |
PF00001+63-334+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR46641+42-435+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
410-458
|
1.000
|
1-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
51035.090
|
8.921
|
19.000
|
18.996
|
10.917
|
42.358
|
57.642
|
12.445
|
6.550
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
283.619
|
414.348
|
193.255
|
164.899
|
126.299
|
132.305
|
98.454
|
124.539
|
458.569
|
426.620
|
440.313
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.332
|
-1.467
|
— |
-0.417
|
— |
-0.417
|
— | — | — | — | — | — | — |
No JSON data available for plots.