Hg_chrom9_TN10mRNA_17137
Organism: Heterodera glycines Gene Locus: chr9:3108416-3110188 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 0.942 | 0.506 | 1.048 | 0.506 | 1.039 | 0.723 | 0.506 | 1.125 | 2.053 | 0.23 | 0.894 | 2.743 | 0.828 | 1.292 | 1.23 | 0.955 | 1.074 | 1.558 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16190
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.538
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.039
|
0.022
|
0.150
|
0.303
|
0.395
|
0.467
|
0.034
|
0.855
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012697
|
1.000
|
1.000
|
Hsc_gene_562.t1
|
Hsc_gene_562.t1
|
— |
Q9XU63.1 Organic solute transporter alpha-like protein 3 [Caenorhabditis elegans]
|
KAI1726724.1 organic solute transporter ostalpha domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.938|GO:0110165_0.938|GO:0071944_0.922|GO:0005886_0.915|GO:0016020_0.915|GO:0098590_0.643|GO:1990075_0.540
|
IPR005178+52-349_55-323_56-316+
|
SM01417+55-323+
|
PF03619+56-316+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+52-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
345-395
|
1.000
|
1-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
44289.870
|
8.626
|
10.000
|
14.684
|
14.430
|
37.215
|
62.785
|
8.861
|
5.823
|
48.861
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1031.660
|
978.663
|
680.050
|
705.120
|
943.010
|
1296.386
|
1663.687
|
1453.081
|
392.271
|
1324.309
|
924.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.754
|
-0.610
|
0.161
|
0.388
|
0.474
|
0.370
|
— |
0.337
|
— | — | — | — | — |
No JSON data available for plots.