Hg_chrom9_TN10mRNA_17138
Organism: Heterodera glycines Gene Locus: chr9:3110991-3112791 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 1.316 | 1.372 | 1.301 | 0.629 | 0.829 | 0.898 | 1.348 | 1.258 | 1.056 | 0.531 | 1.586 | 1.348 | 0.415 | 1.265 | 1.502 | 1.06 | 0.694 | 1.659 | 0.476 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16191
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
73-93
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.607
|
0.146
|
0.007
|
0.591
|
0.289
|
0.109
|
0.174
|
0.102
|
0.099
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012698
|
1.000
|
1.000
|
Hsc_gene_563.t1
|
Hsc_gene_563.t1
|
— |
P17343.2 Guanine nucleotide-binding protein subunit beta-1 [Caenorhabditis elegans]
|
KAH7729736.1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007165
|
GO:0005575_0.812|GO:0110165_0.812|GO:0008150_0.742|GO:0003674_0.624|GO:0009987_0.616|GO:0016020_0.593|GO:0065007_0.592|GO:0050789_0.581|GO:0050794_0.526|GO:0071944_0.502
|
IPR001632+82-98_101-115_120-135_138-155+|IPR001680+75-114_80-114_82-123_117-156_128-156_163-201_168-201_170-210_204-243_205-243_211-252_246-285_248-285_253-294_288-329_303-329_332-371_336-371_339-371+|IPR015943+30-371+|IPR016346+29-371+|IPR019775+188-202+|IPR020472+101-115_188-202_230-244+|IPR036322+57-371+
|
SM00320+75-114_117-156_163-201_204-243_246-285_288-329_332-371+
|
PF00400+80-114_128-156_168-201_205-243_248-285_303-329_336-371+WD_domain,_G-beta_repeat
|
G3DSA:2.130.10.10:FF:000007+26-371+Guanine_nucleotide-binding_protein_G(I)/G(S)/G(T)_subunit_beta-1
|
PTHR19850+29-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-371
|
9jcq_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
41016.050
|
6.329
|
-1.000
|
23.720
|
11.321
|
49.596
|
50.404
|
12.399
|
11.321
|
55.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
458.947
|
246.448
|
238.622
|
458.244
|
766.724
|
613.003
|
1634.112
|
582.699
|
22.930
|
288.252
|
174.542
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.276
|
0.758
|
1.050
|
0.711
|
-0.309
|
1.426
|
— |
1.632
|
— | — | — | — | — |
No JSON data available for plots.