Hg_chrom9_TN10mRNA_17139
Organism: Heterodera glycines Gene Locus: chr9:3112769-3115346 Feature type: polypeptideProtein Sequence
Length: 512
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.999 | 0.923 | 0.269 | 1.302 | 0.601 | 0.651 | 1.27 | 1.215 | 1.267 | 0.769 | 1.034 | 0.922 | 1.164 | 1.953 | 1.032 | 0.672 | 0.858 | 1.803 | 1.264 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16192
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.856
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKMMEYVSENDNKRTEK,RKDIQKDIDSEKNEIIRRK,IRRKRLRRRKRRRRKRTEGEEGKEGKK
|
6-33
|
0.958
|
— | — | — | — |
0.005
|
— | — |
0.066
|
0.152
|
0.004
|
0.201
|
0.221
|
0.210
|
0.518
|
0.005
|
0.176
|
0.784
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012699
|
1.000
|
1.000
|
Hsc_gene_564.t1
|
Hsc_gene_564.t1
|
— |
P04069.1 Carboxypeptidase B [Astacus astacus]
|
KHN86078.1 Carboxypeptidase A1, partial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.699|GO:0005575_0.639|GO:0110165_0.638|GO:0008150_0.616|GO:0003824_0.545|GO:0016787_0.504
|
IPR000834+180-488_186-486_206-218_236-250_331-339_385-398+|IPR036990+33-139+
|
SM00631+180-488+
|
PF00246+186-486+Zinc_carboxypeptidase
|
G3DSA:3.40.630.10:FF:000084+172-503+Carboxypeptidase_B2
|
PTHR11705+28-499+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
135-178;504-512
|
2.000
|
1-134;179-503
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
59040.190
|
9.379
|
15.500
|
30.078
|
12.500
|
48.047
|
51.953
|
17.188
|
12.891
|
46.094
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
834.812
|
312.229
|
561.812
|
789.936
|
721.532
|
1354.237
|
651.215
|
1032.917
|
630.046
|
1145.815
|
924.771
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
1.202
|
0.601
|
-0.163
|
0.924
|
-1.047
|
-0.498
|
-0.523
|
— | — | — | — | — |
No JSON data available for plots.