Hg_chrom9_TN10mRNA_17140
Organism: Heterodera glycines Gene Locus: chr9:3117385-3118869 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.5 | 1.173 | 0.0 | 1.971 | 0.138 | 1.088 | 0.269 | 1.075 | 0.872 | 0.407 | 1.581 | 0.896 | 1.034 | 2.962 | 1.152 | 1.058 | 0.978 | 1.654 | 0.158 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16193
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.577
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRRSRESTGEDEKVRRM,KKRTRGEEEEEDEPWRRRR,KRTRGEEEEEDEPWRRRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.361
|
0.393
|
0.044
|
0.640
|
0.157
|
0.163
|
0.198
|
0.010
|
0.243
|
0.610
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012700
|
1.000
|
1.000
|
Hsc_gene_565.t1
|
Hsc_gene_565.t1
|
— |
Q07160.1 Heat shock protein homolog [Nippostrongylus brasiliensis]
|
KAI1733167.1 hsp20/alpha crystallin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.827|GO:0110165_0.821|GO:0005622_0.745|GO:0008150_0.724|GO:0005737_0.676|GO:0003674_0.580|GO:0050896_0.574
|
IPR001436+47-177+|IPR002068+85-186_98-180+|IPR008978+88-182_92-179+
|
— |
PF00011+98-180+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+47-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-96
|
1.000
|
97-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
21074.580
|
5.518
|
-1.500
|
36.022
|
6.452
|
53.226
|
46.774
|
17.742
|
18.280
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
519.581
|
294.160
|
514.861
|
207.499
|
176.982
|
750.802
|
172.295
|
633.850
|
479.636
|
882.019
|
709.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
-0.641
|
-1.201
|
-0.260
|
2.100
|
-2.115
|
— |
-1.736
|
— | — | — | — | — |
No JSON data available for plots.