Hg_chrom9_TN10mRNA_17142
Organism: Heterodera glycines Gene Locus: chr9:3123821-3126481 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.829 | 1.197 | 0.972 | 0.41 | 2.112 | 2.031 | 0.377 | 1.287 | 0.66 | 1.365 | 0.54 | 2.213 | 0.44 | 0.647 | 1.899 | 1.528 | 0.714 | 0.54 | 0.457 | 0.291 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16195
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
15-45
|
0.994
|
— | — |
0.000
|
— | — |
0.279
|
0.188
|
0.027
|
0.684
|
0.190
|
0.423
|
0.522
|
0.066
|
0.264
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012702
|
1.000
|
1.000
|
Hsc_gene_567.t1
|
Hsc_gene_567.t1
|
— |
Q3LGD4.1 Rab11 family-interacting protein 4A [Danio rerio]
|
KAI1728511.1 FIP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0009987_0.930|GO:0005575_0.799|GO:0110165_0.796|GO:0065007_0.779|GO:0005622_0.777|GO:0050789_0.771|GO:0050794_0.762|GO:0016020_0.715|GO:0043226_0.713|GO:0043229_0.693|GO:0005737_0.639|GO:0043227_0.638|GO:0071944_0.602|GO:0043231_0.595|GO:0005886_0.590|GO:0007049_0.575|GO:0051726_0.547|GO:0003674_0.543|GO:0005488_0.543|GO:0005515_0.543|GO:0016043_0.528|GO:0071840_0.528
|
IPR019018+291-353_317-353+|IPR037245+310-353+|IPR051977+17-353+
|
— |
PF09457+317-353+FIP_domain
|
— |
PTHR15726+17-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-505
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
57877.020
|
4.817
|
-19.500
|
33.465
|
5.743
|
61.584
|
38.416
|
15.446
|
18.020
|
43.960
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1787.351
|
930.581
|
1477.824
|
980.360
|
1316.330
|
2563.456
|
2013.678
|
3340.963
|
2111.700
|
1502.187
|
1763.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.438
|
— |
-0.484
|
0.394
|
0.976
|
-0.337
|
0.275
|
-0.586
|
— | — | — | — | — |
No JSON data available for plots.