Hg_chrom9_TN10mRNA_17143
Organism: Heterodera glycines Gene Locus: chr9:3126848-3128980 Feature type: polypeptideProtein Sequence
Length: 316
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 1.84 | 1.438 | 0.0 | 0.949 | 1.866 | 1.432 | 1.741 | 0.633 | 0.428 | 0.575 | 3.909 | 1.582 | 0.974 | 1.808 | 0.723 | 0.674 | 0.719 | 0.243 | 0.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.769
|
0.503
|
0.002
|
0.305
|
0.119
|
0.343
|
0.029
|
0.119
|
0.260
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012703
|
1.000
|
1.000
|
Hsc_gene_568.t1
|
Hsc_gene_568.t1
|
— |
Q9NKV0.2 Myeloid leukemia factor [Drosophila melanogaster]
|
KAH7729725.1 Protein Y17G7B.17 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.941|GO:0005575_0.888|GO:0110165_0.888|GO:0003674_0.878|GO:0009987_0.874|GO:0005488_0.843|GO:0065007_0.842|GO:0050789_0.841|GO:0008152_0.829|GO:0005622_0.826|GO:0050794_0.815|GO:0016020_0.809|GO:0044238_0.809|GO:0043170_0.804|GO:0009058_0.801|GO:0044237_0.796|GO:0009059_0.794|GO:0044249_0.794|GO:0032502_0.788|GO:0048856_0.788|GO:0043226_0.786|GO:0010467_0.785|GO:0043229_0.785|GO:0006139_0.780|GO:0032501_0.775|GO:0019222_0.768|GO:0031323_0.767|GO:0034654_0.764|GO:0016070_0.763|GO:0090304_0.763|GO:0007275_0.761|GO:0060255_0.760|GO:0080090_0.760|GO:0141187_0.757|GO:0032774_0.752|GO:0009889_0.751|GO:0005515_0.750|GO:0010468_0.750|GO:0010556_0.750|GO:0031326_0.750|GO:0048518_0.749|GO:0048731_0.742|GO:0048522_0.741|GO:0043227_0.739|GO:0043231_0.739|GO:0019219_0.731|GO:0051252_0.731|GO:0030154_0.726|GO:0048869_0.726|GO:2001141_0.721|GO:0006351_0.720|GO:0005634_0.716|GO:0006355_0.716|GO:0048513_0.709|GO:0050793_0.702|GO:0009653_0.700|GO:0005737_0.697|GO:0051239_0.696|GO:0065008_0.695|GO:0008283_0.689|GO:0045595_0.688|GO:0002376_0.682|GO:0051094_0.682|GO:0042127_0.681|GO:0045597_0.681|GO:0009887_0.679|GO:0001654_0.677|GO:0007423_0.677|GO:0048880_0.677|GO:0150063_0.677|GO:0002682_0.676|GO:0002684_0.675|GO:0031647_0.674|GO:0090596_0.674|GO:0050821_0.673|GO:0001745_0.670|GO:0035736_0.670|GO:0042386_0.670|GO:0042688_0.670|GO:0042689_0.670|GO:0042691_0.670|GO:0045610_0.670|GO:0045612_0.670|GO:0048592_0.670|GO:0048749_0.670|GO:2000495_0.670|GO:0043228_0.659|GO:0043232_0.659|GO:0008134_0.657|GO:0140297_0.656|GO:0051087_0.650|GO:0005694_0.562|GO:0005700_0.540|GO:0005705_0.540|GO:0048471_0.540|GO:0098687_0.540
|
IPR019376+2-244_41-201+
|
— |
PF10248+41-201+Myelodysplasia-myeloid_leukemia_factor_1-interacting_protein
|
— |
PTHR13105+2-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-316
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
35580.340
|
6.897
|
2.500
|
29.747
|
10.443
|
54.114
|
45.886
|
16.139
|
13.608
|
51.266
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
4370.319
|
10609.831
|
4012.740
|
2746.437
|
2708.372
|
3540.758
|
3505.480
|
7595.886
|
4829.970
|
2477.855
|
3485.905
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.631
|
-2.087
|
-0.439
|
— |
0.401
|
— |
0.998
|
-0.972
|
— | — | — | — | — |
No JSON data available for plots.