SCN Proteipedia

Hg_chrom9_TN10mRNA_17144

Organism: Heterodera glycines Gene Locus: chr9:3130215-3133645 Feature type: polypeptide

Protein Sequence

Length: 750

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.899	0.775	0.752	0.368	1.4	1.299	0.571	1.067	0.919	1.045	1.192	1.412	0.852	1.692	1.551	1.41	0.678	0.606	0.615	0.863	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16197	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PTFKRLR,KKREQKVKLEAELKEKGK,RKRLAAEREKAEQMRRRST,KRLAAEREKAEQMRRRSTR	—	—	—	—	—	—	0.000	—	—	0.760	0.051	0.023	0.224	0.232	0.034	0.139	0.009	0.064	0.075

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012704	1.000	1.000	Hsc_gene_569.t1	Hsc_gene_569.t1	—	Q8IWX8.3 Calcium homeostasis endoplasmic reticulum protein [Homo sapiens]	KAI1728509.1 surp module domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0006396\|GO:0006874	GO:0005575_0.963\|GO:0110165_0.958\|GO:0005622_0.935\|GO:0043226_0.902\|GO:0016020_0.901\|GO:0043229_0.894\|GO:0043227_0.840\|GO:0043231_0.824\|GO:0005634_0.783\|GO:0003674_0.741\|GO:0005488_0.741\|GO:0008150_0.737\|GO:0009987_0.713\|GO:0065007_0.685\|GO:0050789_0.675\|GO:0050794_0.662\|GO:0003676_0.655\|GO:0097159_0.655\|GO:0003723_0.609\|GO:0032502_0.598\|GO:0048856_0.598\|GO:0048519_0.555\|GO:0048523_0.534\|GO:0005737_0.510\|GO:0031974_0.504\|GO:0031981_0.504\|GO:0043233_0.504\|GO:0070013_0.504	IPR000061+15-62_15-67_17-61+\|IPR000467+679-728_681-730_682-727+\|IPR006569+156-300_163-288+\|IPR008942+158-310+\|IPR035967+2-73_6-64+\|IPR039037+5-743+	SM00443+679-728+\|SM00648+15-67+	PF01585+682-727+G-patch_domain\|PF01805+15-62+Surp_module\|PF04818+163-288+CID_domain	—	PTHR12323+5-743+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;329-463;523-750	2.000	10-328;464-522	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.930	84588.960	9.824	30.000	30.133	8.933	52.533	47.467	17.600	12.533	47.867

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	yellow	1595.875	2637.779	1878.100	1704.950	1497.478	1421.512	2412.668	1774.020	1344.206	976.357	1134.006

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.721	-0.767	—	-0.219	—	0.774	—	0.587	—	—	—	—	—

No JSON data available for plots.

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