SCN Proteipedia

Hg_chrom9_TN10mRNA_17145

Organism: Heterodera glycines Gene Locus: chr9:3133677-3137310 Feature type: polypeptide

Protein Sequence

Length: 713

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.75	1.044	0.995	0.871	1.309	1.151	0.735	1.683	1.371	1.44	0.744	1.32	1.13	0.728	1.03	1.002	0.713	1.041	0.647	0.949	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16198	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.776

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRRR	—	—	—	—	—	—	0.000	—	—	0.567	0.237	0.034	0.509	0.230	0.171	0.184	0.020	0.093	0.106

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012705	1.000	1.000	Hsc_gene_570.t1	Hsc_gene_570.t1	—	Q9QXK7.2 Cleavage and polyadenylation specificity factor subunit 3 [Mus musculus]	KAI1713956.1 pre-mRNA 3'-end-processing endonuclease polyadenylation factor c-term domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.845\|GO:0009987_0.784\|GO:0005575_0.733\|GO:0110165_0.732\|GO:0008152_0.664\|GO:0005622_0.654\|GO:0016020_0.641\|GO:0044237_0.637\|GO:0044238_0.632\|GO:0009058_0.617\|GO:0043170_0.615\|GO:0044249_0.601\|GO:0043226_0.596\|GO:0009059_0.584\|GO:0010467_0.576\|GO:0006139_0.570\|GO:0043229_0.564\|GO:0034654_0.556\|GO:0090304_0.554\|GO:0043227_0.553\|GO:0003674_0.552\|GO:0016070_0.548\|GO:0141187_0.548\|GO:0032774_0.545\|GO:0043231_0.527	IPR001279+11-224_38-184+\|IPR011108+372-425+\|IPR021718+467-713_470-707+\|IPR022712+236-357+\|IPR036866+31-414_31-449+\|IPR050698+31-641+	SM00849+11-224+\|SM01027+236-357+\|SM01098+467-713+	PF07521+372-425+Zn-dependent_metallo-hydrolase_RNA_specificity_domain\|PF10996+236-357+Beta-Casp_domain\|PF11718+470-707+Pre-mRNA_3'-end-processing_endonuclease_polyadenylation_factor_C-term\|PF16661+38-184+Metallo-beta-lactamase_superfamily_domain	G3DSA:3.40.50.10890:FF:000001+204-385+Cleavage_and_polyadenylation_specificity_factor_subunit_3	PTHR11203+31-641+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-713	8t1r_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.568	80309.550	5.579	-12.000	26.648	11.501	46.985	53.015	13.324	13.324	47.125

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	saddlebrown	1812.421	2099.282	1879.181	1848.899	1787.488	1527.407	1781.402	1885.781	1753.839	1810.423	1786.173

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.390	-0.320	—	—	-0.212	0.233	0.199	—	—	—	—	—	—

No JSON data available for plots.

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