Hg_chrom9_TN10mRNA_17146
Organism: Heterodera glycines Gene Locus: chr9:3137620-3139154 Feature type: polypeptideProtein Sequence
Length: 305
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.762 | 0.715 | 0.565 | 1.257 | 1.177 | 0.703 | 1.475 | 1.166 | 1.108 | 1.192 | 0.771 | 1.184 | 1.009 | 1.271 | 0.984 | 0.86 | 0.695 | 1.261 | 0.964 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16199
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KRLAEFEVGKGKKINK
|
— | — | — | — |
1-26
|
— |
0.556
|
— |
0.000
|
0.472
|
0.410
|
0.173
|
0.668
|
0.110
|
0.129
|
0.202
|
0.032
|
0.140
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012706
|
1.000
|
1.000
|
Hsc_gene_571.t1
|
Hsc_gene_571.t1
|
— |
Q09422.2 Serine/threonine-protein phosphatase Pgam5, mitochondrial [Caenorhabditis elegans]
|
KAI1728508.1 histidine phosphatase superfamily (branch 1) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0009987_0.868|GO:0008152_0.784|GO:0005575_0.667|GO:0110165_0.660|GO:0008219_0.623|GO:0012501_0.622|GO:0005622_0.612|GO:0070266_0.608|GO:0097300_0.608|GO:0016020_0.592|GO:0043226_0.571|GO:0043229_0.550|GO:0005737_0.546|GO:0043227_0.517|GO:0043231_0.506|GO:0065007_0.504
|
IPR013078+113-253_113-290_114-191_217-285+|IPR029033+104-304_111-300+|IPR051021+13-304+
|
SM00855+113-253+
|
PF00300+114-191_217-285+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR20935+13-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71
|
1.000
|
72-305
|
3o0t_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
34356.160
|
9.398
|
12.500
|
28.525
|
12.131
|
48.525
|
51.475
|
17.049
|
11.475
|
46.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1742.667
|
1485.252
|
1169.121
|
2277.703
|
2516.816
|
1943.096
|
1737.535
|
1362.236
|
994.393
|
2193.962
|
1679.861
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.575
|
0.480
|
1.071
|
0.112
|
-0.358
|
— |
-0.617
|
0.494
|
— | — | — | — | — |