Hg_chrom9_TN10mRNA_17154
Organism: Heterodera glycines Gene Locus: chr9:3163722-3167344 Feature type: polypeptideProtein Sequence
Length: 822
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.556 | 0.774 | 0.545 | 0.953 | 1.56 | 0.333 | 1.582 | 1.108 | 1.48 | 0.94 | 2.147 | 1.453 | 0.772 | 1.738 | 0.938 | 0.718 | 0.866 | 0.749 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16207
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.564
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKKR,RRFADHWLAVVRRNRI,RKVIRRWISFVAKKKQQR,KKRPNRPVQSVLQKRQKRL,KRWLRRFADHWLAVVRRNR
|
10-36
|
0.871
|
— | — | — | — |
0.000
|
— | — |
0.616
|
0.169
|
0.007
|
0.500
|
0.059
|
0.121
|
0.105
|
0.129
|
0.065
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012710
|
1.000
|
1.000
|
Hsc_gene_18913.t1
|
Hsc_gene_18913.t1
|
— |
Q9WUU9.2 Germinal-center associated nuclear protein [Mus musculus]
|
KAF7629874.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.914|GO:0110165_0.912|GO:0005622_0.874|GO:0016020_0.852|GO:0043226_0.829|GO:0043229_0.812|GO:0043227_0.771|GO:0043231_0.750|GO:0008150_0.671|GO:0005737_0.668|GO:0005634_0.656|GO:0009987_0.633
|
IPR000717+234-406+|IPR005062+100-385+|IPR045107+87-428+
|
— |
PF03399+100-385+SAC3/GANP_family
|
— |
PTHR12436+87-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;761-822
|
1.000
|
28-760
|
8r7k_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
95442.290
|
10.444
|
52.000
|
27.859
|
10.949
|
51.582
|
48.418
|
17.883
|
9.976
|
42.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2398.046
|
4663.573
|
2779.401
|
2521.824
|
2336.106
|
1836.062
|
3130.005
|
3335.112
|
1302.216
|
1789.007
|
1580.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.977
|
-1.024
|
— |
-0.142
|
-0.333
|
0.780
|
0.755
|
— | — | — | — | — |
4.340
|
No JSON data available for plots.