Hg_chrom9_TN10mRNA_17158
Organism: Heterodera glycines Gene Locus: chr9:3183570-3184638 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.065 | 1.472 | 0.85 | 1.056 | 0.722 | 0.922 | 1.232 | 1.252 | 0.761 | 1.334 | 1.243 | 1.565 | 0.813 | 1.796 | 0.453 | 1.039 | 1.014 | 1.083 | 0.207 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16211
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQIMTPNGGKRMRL,KRKNKQLVSRNIIRRRAA,RRHQRFTWYLTGSTDRGRK
|
52-90
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.815
|
0.318
|
0.040
|
0.272
|
0.181
|
0.083
|
0.082
|
0.005
|
0.080
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000506
|
5.000
|
2.000
|
Hsc_gene_22209.t2;Hsc_gene_22209.t3
|
Hsc_gene_4704.t2
|
— | — |
KAI1711545.1 tc5 transposase DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.867|GO:0110165_0.861|GO:0005622_0.809|GO:0043226_0.760|GO:0043229_0.755|GO:0016020_0.754|GO:0043227_0.710|GO:0043231_0.696|GO:0005634_0.643
|
IPR006600+22-90_28-90_32-90+|IPR009057+27-85+
|
SM00674+28-90+
|
PF03221+32-90+Tc5_transposase_DNA-binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25
|
1.000
|
26-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
32309.890
|
9.507
|
12.500
|
34.507
|
10.211
|
51.408
|
48.592
|
20.070
|
14.437
|
49.648
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
16.268
|
1.999
|
6.260
|
9.721
|
12.767
|
10.007
|
3.032
|
7.829
|
17.950
|
38.357
|
29.611
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.410
|
2.149
|
— | — | — |
-1.721
|
— | — | — | — | — | — | — |
No JSON data available for plots.