SCN Proteipedia

Hg_chrom9_TN10mRNA_17161

Organism: Heterodera glycines Gene Locus: chr9:3192588-3200561 Feature type: polypeptide

Protein Sequence

Length: 1,531 (Signal peptide: 1-29)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.722	1.124	0.903	0.833	0.914	1.139	0.63	1.208	1.19	1.121	0.722	1.268	1.324	1.218	1.413	1.334	0.824	0.98	0.703	1.057	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16214	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide\|transmembrane_domain	cell_membrane	chloroplast	RRVPRSAQGKRQPLTIKRK,RKNRYNDIKACDATRVRLR	—	—	46-70	0.906	1-29	0.970	1.000	0.000	0.000	0.120	0.071	0.011	0.311	0.222	0.482	0.315	0.049	0.808	0.086

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001459	1.000	4.000	Hsc_gene_18910.t1;Hsc_gene_18910.t2;Hsc_gene_18910.t4;Hsc_gene_18910.t5	Hsc_gene_18910.t1;Hsc_gene_18910.t2;Hsc_gene_18910.t3;Hsc_gene_18910.t4;Hsc_gene_18910.t5	—	H2KZM6.1 Receptor-type tyrosine-protein phosphatase [Caenorhabditis elegans]	KAI1726726.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0005515\|GO:0006470\|GO:0016311	GO:0008150_0.869\|GO:0005575_0.838\|GO:0110165_0.836\|GO:0003674_0.804\|GO:0009987_0.789\|GO:0016020_0.768\|GO:0071944_0.721\|GO:0065007_0.703\|GO:0005886_0.700\|GO:0050789_0.664\|GO:0050794_0.646\|GO:0050896_0.611\|GO:0003824_0.602\|GO:0032501_0.573\|GO:0140096_0.573\|GO:0016787_0.568\|GO:0051716_0.549\|GO:0016788_0.541\|GO:0004721_0.531\|GO:0016791_0.531\|GO:0042578_0.531\|GO:0007154_0.518\|GO:0023052_0.516\|GO:0004725_0.508	IPR000242+784-1151_785-1149_808-936_838-845_1042-1148_1046-1063_1085-1103_1116-1131_1132-1142_1260-1528_1261-1526_1288-1525+\|IPR000387+1066-1140_1441-1517+\|IPR003595+1047-1148_1421-1525+\|IPR016130+1088-1098+\|IPR029021+772-948_774-1152_985-1157_1251-1531_1259-1529+\|IPR036116+466-548+\|IPR050348+335-1155+	SM00194+784-1151_1260-1528+\|SM00404+1047-1148_1421-1525+	PF00102+808-936_1042-1148_1288-1525+Protein-tyrosine_phosphatase	G3DSA:3.90.190.10:FF:000102+1251-1531+Receptor-type_tyrosine-protein_phosphatase	PTHR19134+335-1155+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	929-994	2.000	1-928;995-1531	2ooq_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.856	172720.600	8.432	37.500	24.559	11.692	48.204	51.796	14.108	10.451	50.882

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2081.915	3260.302	2116.306	1731.227	1255.224	1529.519	2363.823	2127.240	1951.716	2250.727	2122.579

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.853	-1.050	-0.181	-0.495	0.299	0.638	0.372	0.293	—	—	—	—	—

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