Hg_chrom9_TN10mRNA_17166
Organism: Heterodera glycines Gene Locus: chr9:3208483-3210297 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.139 | 1.093 | 0.691 | 1.262 | 1.256 | 0.955 | 1.114 | 0.841 | 0.933 | 0.574 | 2.62 | 1.361 | 0.857 | 0.955 | 0.827 | 1.022 | 1.114 | 0.685 | 1.114 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRISEQFTAMFRRKAF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.334
|
0.258
|
0.123
|
0.657
|
0.110
|
0.200
|
0.180
|
0.088
|
0.161
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000302
|
5.000
|
4.000
|
Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1;Hsc_gene_5981.t1
|
Hsc_gene_11418.t1;Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1
|
B0272.1;C36E8.5;C54C6.2;K01G5.7
|
P18241.1 Tubulin beta-1 chain [Brugia pahangi]
|
KAF7632908.1 Tubulin beta chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
|
GO:0005575_0.785|GO:0110165_0.777|GO:0008150_0.755|GO:0005622_0.634|GO:0009987_0.617|GO:0016020_0.592|GO:0043226_0.545|GO:0003674_0.511|GO:0043229_0.504
|
IPR000217+1-426_10-30_51-70_93-104_106-130_132-150_151-172_176-189_190-210_370-398+|IPR002453+41-58_88-99_108-126_152-164_212-224_230-239_245-258_265-281_311-329_329-343_347-370_377-388_412-430+|IPR003008+3-211_47-244+|IPR008280+244-429+|IPR013838+1-4+|IPR017975+140-146+|IPR018316+246-383_261-382+|IPR023123+374-443+|IPR036525+1-243_1-263+|IPR037103+264-373+
|
SM00864+47-244+|SM00865+246-383+
|
PF00091+3-211+Tubulin/FtsZ_family,_GTPase_domain|PF03953+261-382+Tubulin_C-terminal_domain
|
G3DSA:1.10.287.600:FF:000006+374-445+Tubulin_beta_chain|G3DSA:3.30.1330.20:FF:000002+264-373+Tubulin_beta_chain|G3DSA:3.40.50.1440:FF:000003+1-263+Tubulin_beta_chain
|
PTHR11588+1-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
412-449
|
1.000
|
1-411
|
6e88_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
50123.440
|
4.584
|
-18.000
|
24.276
|
11.804
|
46.102
|
53.898
|
10.690
|
13.586
|
52.116
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
11319.614
|
4187.047
|
5768.240
|
14266.229
|
16771.581
|
12183.398
|
14488.775
|
8379.685
|
6289.003
|
16289.701
|
12003.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.234
|
1.631
|
1.414
|
0.201
|
-0.445
|
0.260
|
-0.647
|
0.933
|
— |
1.328
|
— | — | — |
No JSON data available for plots.