Hg_chrom9_TN10mRNA_17168
Organism: Heterodera glycines Gene Locus: chr9:3213928-3217395 Feature type: polypeptideProtein Sequence
Length: 714
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 0.814 | 0.331 | 0.773 | 1.377 | 1.221 | 0.75 | 0.84 | 1.245 | 1.59 | 0.722 | 1.977 | 1.867 | 0.7 | 1.115 | 0.96 | 0.872 | 0.785 | 1.293 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16220
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RQQKRRF,REEKKEQREKEEKRE,KKEEQREEKKEQREKEEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.066
|
0.078
|
0.021
|
0.082
|
0.406
|
0.452
|
0.251
|
0.117
|
0.670
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012716
|
1.000
|
1.000
|
Hsc_gene_18903.t1
|
Hsc_gene_18903.t1;Hsc_gene_18904.t1
|
— |
Q9HAS3.1 Solute carrier family 28 member 3 [Homo sapiens]
|
KAI1728496.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005337|GO:0016020|GO:1901642
|
GO:0005575_0.871|GO:0110165_0.871|GO:0008150_0.868|GO:0016020_0.849|GO:0005886_0.844|GO:0071944_0.844|GO:0009987_0.796|GO:0051179_0.779|GO:0051234_0.771|GO:0006810_0.770|GO:0003674_0.705|GO:0055085_0.671|GO:0005215_0.597|GO:0022857_0.597|GO:0006811_0.590|GO:0034220_0.586|GO:0071705_0.575|GO:0005622_0.560|GO:0098660_0.557|GO:0015075_0.550|GO:0006812_0.543|GO:0098655_0.537|GO:0043226_0.533|GO:0030001_0.520|GO:0098662_0.520|GO:0008324_0.516|GO:0015931_0.513|GO:0015858_0.508|GO:1901264_0.508|GO:1901642_0.508|GO:0043229_0.507|GO:0015318_0.505
|
IPR002668+269-341+|IPR008276+149-677+|IPR011642+361-454+|IPR011657+459-669+|IPR018270+265-671+
|
— |
PF01773+269-341+Na+_dependent_nucleoside_transporter_N-terminus|PF07662+459-669+Na+_dependent_nucleoside_transporter_C-terminus|PF07670+361-454+Nucleoside_recognition
|
— |
PTHR10590+149-677+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-144
|
1.000
|
145-714
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
80323.280
|
7.518
|
7.000
|
21.989
|
12.045
|
42.297
|
57.703
|
11.905
|
10.084
|
43.978
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
670.662
|
61.253
|
452.282
|
1186.159
|
946.450
|
1107.884
|
1182.275
|
585.149
|
632.875
|
388.946
|
493.487
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.653
|
4.136
|
1.500
|
-0.358
|
0.242
|
— |
-1.030
|
1.158
|
— | — | — | — | — |
No JSON data available for plots.