Hg_chrom9_TN10mRNA_17169
Organism: Heterodera glycines Gene Locus: chr9:3223268-3225805 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.094 | 1.39 | 1.318 | 0.637 | 0.98 | 0.91 | 1.324 | 1.111 | 1.113 | 0.446 | 1.73 | 1.062 | 0.396 | 1.321 | 1.429 | 1.013 | 0.758 | 1.81 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16221
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
42-62
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.488
|
0.147
|
0.002
|
0.406
|
0.104
|
0.140
|
0.281
|
0.039
|
0.236
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012717
|
1.000
|
1.000
|
Hsc_gene_18901.t1
|
Hsc_gene_18901.t1
|
F13D12.7a
|
P17343.2 Guanine nucleotide-binding protein subunit beta-1 [Caenorhabditis elegans]
|
ACB97665.1 G-protein beta subunit [Meloidogyne javanica];ACB97666.1 G-protein beta subunit [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007165
|
GO:0005575_0.810|GO:0110165_0.810|GO:0008150_0.740|GO:0003674_0.624|GO:0009987_0.619|GO:0016020_0.594|GO:0065007_0.582|GO:0050789_0.575|GO:0050794_0.520|GO:0071944_0.509
|
IPR001632+51-67_70-84_89-104_107-124+|IPR001680+44-83_48-83_51-92_86-125_97-125_132-170_137-170_139-179_173-212_174-212_180-221_215-254_217-254_222-263_257-298_272-298_301-340_306-340_308-340+|IPR015943+1-340+|IPR016346+3-340+|IPR019775+157-171+|IPR020472+70-84_157-171_199-213+|IPR036322+4-340+
|
SM00320+44-83_86-125_132-170_173-212_215-254_257-298_301-340+
|
PF00400+48-83_97-125_137-170_174-212_217-254_272-298_306-340+WD_domain,_G-beta_repeat
|
G3DSA:2.130.10.10:FF:000007+1-340+Guanine_nucleotide-binding_protein_G(I)/G(S)/G(T)_subunit_beta-1
|
PTHR19850+3-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-340
|
7xjl_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
37487.100
|
6.028
|
-2.500
|
23.529
|
10.882
|
48.235
|
51.765
|
12.059
|
11.471
|
55.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
2723.758
|
5486.111
|
4862.573
|
3350.945
|
2526.489
|
4134.176
|
2087.883
|
4973.738
|
1315.263
|
646.777
|
933.271
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.403
|
-0.848
|
-0.429
|
-0.439
|
0.725
|
-0.976
|
— |
-1.111
|
— | — |
2.115
|
— | — |
No JSON data available for plots.