Hg_chrom9_TN10mRNA_17170
Organism: Heterodera glycines Gene Locus: chr9:3228543-3237663 Feature type: polypeptideProtein Sequence
Length: 1,989
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.134 | 0.807 | 1.07 | 1.144 | 1.14 | 1.122 | 0.904 | 0.855 | 0.737 | 0.938 | 0.625 | 1.006 | 1.047 | 1.334 | 1.067 | 1.329 | 1.253 | 0.846 | 1.044 | 0.34 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16222
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.760
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRRS,RKRR,RRAGGQKKSAARRAKRAAD
|
5-55
|
0.649
|
28-74
|
0.943
|
— | — |
0.039
|
— | — |
0.150
|
0.027
|
0.019
|
0.275
|
0.166
|
0.322
|
0.388
|
0.031
|
0.652
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012718
|
1.000
|
1.000
|
Hsc_gene_18900.t1
|
Hsc_gene_18900.t1
|
— | — |
KAI1726697.1 DOMON domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.808|GO:0065007_0.706|GO:0005575_0.642|GO:0110165_0.635|GO:0009987_0.575|GO:0050789_0.508
|
IPR000082+1675-1793+|IPR002919+498-555_621-674+|IPR005018+744-858_745-878_781-876_944-1055_945-1064_972-1063_1424-1538_1424-1544_1452-1543+|IPR036084+390-461_495-556_620-675+|IPR045266+745-875_944-1088_1424-1561+
|
SM00664+781-876_972-1063_1452-1543+
|
PF01826+498-555_621-674+Trypsin_Inhibitor_like_cysteine_rich_domain|PF03351+744-858_944-1055_1424-1538+DOMON_domain
|
— |
PTHR46901+728-919+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;70-117;566-617;1075-1125;1207-1407;1556-1686;1838-1989
|
6.000
|
28-69;118-565;618-1074;1126-1206;1408-1555;1687-1837
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
213938.860
|
4.830
|
-50.000
|
23.781
|
7.994
|
48.567
|
51.433
|
11.061
|
12.720
|
59.477
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1065.787
|
1949.630
|
796.413
|
567.363
|
1405.616
|
3516.694
|
843.198
|
777.983
|
61.578
|
920.301
|
552.277
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.522
|
-1.918
|
-0.380
|
1.276
|
1.339
|
-2.050
|
-2.288
|
— |
-4.036
|
— | — | — | — |
No JSON data available for plots.