Hg_chrom9_TN10mRNA_17172
Organism: Heterodera glycines Gene Locus: chr9:3247129-3248874 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 0.497 | 1.507 | 1.106 | 0.624 | 0.686 | 0.923 | 1.337 | 1.07 | 1.734 | 0.446 | 1.258 | 1.337 | 0.874 | 1.582 | 1.299 | 0.701 | 0.648 | 1.44 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16224
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.454
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRQWHDGTATGEEKQERRK
|
16-55
|
0.876
|
— | — | — | — |
0.000
|
— | — |
0.358
|
0.237
|
0.011
|
0.666
|
0.214
|
0.163
|
0.179
|
0.169
|
0.065
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004926
|
2.000
|
1.000
|
Hsc_gene_18898.t1
|
Hsc_gene_18898.t1
|
— |
Q5EAD5.1 Geranylgeranyl transferase type-1 subunit beta [Bos taurus]
|
KAI1728502.1 prenyltransferase and squalene oxidase repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0008318
|
GO:0008150_0.834|GO:0005575_0.758|GO:0009987_0.751|GO:0003674_0.715|GO:0003824_0.595|GO:0016740_0.542|GO:0110165_0.542|GO:0008152_0.504
|
IPR001330+108-131_138-181_186-228_256-281_291-327+|IPR008930+14-356+|IPR045089+16-358+
|
— |
PF00432+108-131_138-181_186-228_256-281_291-327+Prenyltransferase_and_squalene_oxidase_repeat
|
— |
PTHR11774+16-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
358-374
|
1.000
|
1-357
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.654
|
41790.690
|
6.488
|
0.000
|
25.401
|
12.299
|
43.583
|
56.417
|
13.369
|
12.032
|
50.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkgrey
|
1006.086
|
476.415
|
393.131
|
548.190
|
678.025
|
603.334
|
1170.191
|
510.543
|
550.747
|
2346.131
|
1576.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.507
|
— |
0.589
|
0.275
|
— |
0.966
|
-0.346
|
1.339
|
— | — | — | — | — |
No JSON data available for plots.