Hg_chrom9_TN10mRNA_17175
Organism: Heterodera glycines Gene Locus: chr9:3250712-3252775 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.346 | 0.758 | 0.513 | 1.141 | 1.679 | 1.524 | 1.19 | 1.72 | 0.684 | 0.812 | 2.626 | 0.661 | 1.431 | 1.458 | 0.723 | 0.927 | 0.767 | 0.0 | 0.788 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16226
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.894
|
0.055
|
0.003
|
0.469
|
0.036
|
0.039
|
0.027
|
0.002
|
0.041
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012721
|
1.000
|
1.000
|
Hsc_gene_18896.t1
|
Hsc_gene_18896.t1;Hsc_gene_18896.t2
|
— |
P91277.1 Heterogeneous nuclear ribonucleoprotein K homolog [Caenorhabditis elegans]
|
KAH7727575.1 Protein F26B1.2 c [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.888|GO:0009987_0.808|GO:0005575_0.772|GO:0003674_0.766|GO:0110165_0.750|GO:0005488_0.715|GO:0065007_0.668|GO:0005622_0.664|GO:0050789_0.660|GO:0097159_0.625|GO:0008152_0.614|GO:0050794_0.607|GO:0003676_0.599|GO:0044237_0.587|GO:0044238_0.582|GO:0043170_0.575|GO:0009058_0.571|GO:0044249_0.556|GO:0009059_0.548|GO:0016020_0.522|GO:0010467_0.519|GO:0019222_0.514|GO:0006139_0.512|GO:0031323_0.512|GO:0005737_0.511|GO:0003723_0.506|GO:0060255_0.506
|
IPR004087+34-102_108-179_254-323+|IPR004088+38-98_112-175_257-320+|IPR036612+34-104_106-181_107-189_251-327_253-331+
|
SM00322+34-102_108-179_254-323+
|
PF00013+38-98_112-175_257-320+KH_domain
|
— |
PTHR10288+21-322+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;153-336
|
1.000
|
25-152
|
1j5k_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
36596.890
|
8.835
|
9.000
|
25.893
|
7.440
|
44.643
|
55.357
|
14.881
|
11.012
|
49.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3209.964
|
1796.452
|
1536.381
|
2586.664
|
3041.788
|
3055.289
|
3674.020
|
2272.253
|
669.551
|
6805.360
|
4175.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.455
|
0.389
|
0.860
|
0.202
|
— |
0.276
|
-0.533
|
0.836
|
-3.458
|
2.108
|
— | — | — |
No JSON data available for plots.