Hg_chrom9_TN10mRNA_17176
Organism: Heterodera glycines Gene Locus: chr9:3255791-3257795 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.432 | 0.627 | 0.823 | 0.707 | 1.292 | 2.021 | 0.663 | 0.589 | 1.075 | 0.723 | 0.156 | 0.589 | 2.857 | 1.353 | 1.137 | 0.522 | 0.723 | 0.612 | 0.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16227
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GPKGPKGPKGPNGVPGLPGRAGKPGEKGPPGVP
|
6-47
|
0.871
|
— | — | — | — |
0.000
|
— | — |
0.048
|
0.067
|
0.018
|
0.117
|
0.463
|
0.213
|
0.260
|
0.006
|
0.594
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012722
|
1.000
|
1.000
|
Hsc_gene_18895.t1
|
Hsc_gene_18895.t1
|
— | — |
XP_024506138.1 Nematode cuticle collagen, N-terminal domain and Collagen triple helix repeat-containing protein [Strongyloides ratti];CEF66938.1 Nematode cuticle collagen, N-terminal domain and Collagen triple helix repeat-containing protein [Strongyloides ratti]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+29-79_30-78+|IPR008160+170-203_219-276_285-343+|IPR050632+31-357+
|
SM01088+29-79+
|
PF01391+170-203_219-276_285-343+Collagen_triple_helix_repeat_(20_copies)|PF01484+30-78+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+31-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;157-377
|
1.000
|
2-156
|
9han_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
38538.560
|
9.943
|
16.500
|
20.424
|
5.570
|
38.462
|
61.538
|
12.732
|
7.692
|
62.865
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
272.007
|
1149.263
|
47.242
|
23.799
|
45.122
|
997.507
|
36.767
|
608.983
|
19.350
|
84.762
|
56.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.839
|
-5.731
|
-0.878
|
0.892
|
4.480
|
-4.752
|
-0.824
|
-3.902
|
— | — | — | — | — |
No JSON data available for plots.